Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1285 320 5e-85 seq59 188 2e-45 seq1410 134 4e-29 seq156 96.9 1e-17 seq352 77.0 1e-11 >seq1285 Length=268354 Score = 320 bits (354), Expect = 5e-85 Identities = 278/343 (81%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 256432 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 256491 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||| ||||||||| Sbjct 256492 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTATGGGAGGCAG 256551 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 || |||||||| || |||||||| ||||||||||| ||||| |||||||| | || Sbjct 256552 CAATGGGGAATTTTCTGCAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTGGAGGTAGA 256611 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| ||||| || || ||| | | | ||||| ||||||||||| ||| ||| Sbjct 256612 AGGCCTACGGGTTGTGAACTTCTTTTCCCGGAGAAGAAGTAATGACGGTATTTGGGGAAT 256671 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||| ||| |||||| ||| || ||||||||||| Sbjct 256672 AAGCATCGGCTAACTCTGTGCCAGCAGCTGCGATAATACAGAGGATGCAAGCGTTATCCG 256731 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 256732 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 256773 >seq59 Length=835084 Score = 188 bits (208), Expect = 2e-45 Identities = 241/329 (73%), Gaps = 11/329 (3%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| | |||| | || |||||| | | ||| |||| | || | Sbjct 28640 ATTAGGTAGTTGGTCACGTAAAGTCTCACCAAGCCAATGATGCTTAGCTGGTCTTTTCAG 28699 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| | |||||||||||| || ||||| | || ||| |||||||||| Sbjct 28700 ATGATCAGCCACACTATGACTGAGACACGGCACAGACTCCCATGGAAGGGAGCAGTGGGG 28759 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| |||||||||||||| ||| |||||| | |||||| || ||||| | | Sbjct 28760 AATTTTGGACAATGGGCAAAAGGTCGATCCAGCAATATCACGTGAGTGAAGAAGGGCAAT 28819 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| ||| ||||| ||||||| Sbjct 28820 GCCGCTTGTAAAGCTCTTTCATCGAGTGTGCGATCATGACAAGACTCGAGGAAGAAGCCC 28879 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATAC------GTAGGGGGCTAGCGTTATCCG 457 | |||||| |||||||||||||||||||| || | |||||| || || | | Sbjct 28880 TGACTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGTGGGAGGGGGGCAAGTATTCTTCA 28939 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGG 486 |||| ||| |||||||||||| |||||| Sbjct 28940 GAATGACT-GGGCGTAAAGGGAACGTAGG 28967 >seq1410 Length=511304 Score = 134 bits (148), Expect = 4e-29 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 198 AAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGG 257 ||||||| |||||||||| | |||||| ||||| |||||| ||| |||||||||||| Sbjct 480357 AAGGCGATGATCAGTAGCTTGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGG 480298 Query 258 TCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 ||| ||||||||||||||||||||| |||||| || | |||||| ||||||||||| Sbjct 480297 CCCAGACTCCTACGGGAGGCAGCAGTTGGGAATTTTCCGCAATGGCCAAAAGCCTGA 480241 >seq156 Length=790707 Score = 96.9 bits (106), Expect = 1e-17 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| |||| |||||| ||| ||||||||| || ||| |||||||||||||||||| Sbjct 597306 GAGAGGATGATTAGCCACACTGGGACTGAGACATGGCCCAGACTCCTACGGGAGGCAGCG 597365 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 ||| ||||| || | |||||| ||||||||| Sbjct 597366 GTGAGGAATTTTCCGTAATGGGAGAAAGCCTGA 597398 >seq352 Length=581315 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||||||||||||||||| |||||||||| || | ||| ||| ||| |||| | ||||| Sbjct 76535 ACTCCTACGGGAGGCAGTAGTGGGGAATTTTTCGCAAATGGCGAAATCCTGGCGAAGCAA 76594 Query 323 CGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAA 357 ||||| || | |||||||| ||||||| || Sbjct 76595 TGCCGCTTGGAGGCAGAAGGCCTATGGGTCGTGAA 76629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497355786368