Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1285 244 3e-62 seq59 156 1e-35 seq330 145 2e-32 seq764 73.4 1e-10 >seq1285 Length=268354 Score = 244 bits (270), Expect = 3e-62 Identities = 261/345 (76%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 || ||| ||| |||| ||||||||| ||||||||||| ||| |||||| ||| || Sbjct 256660 TATTTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCTGCGATAATACAGAGGATGC 256719 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||||||||||| | ||||||||||| || |||||||| || ||||||| | || Sbjct 256720 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 256779 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | | ||||| |||| || || | |||||| | ||| |||| | | ||| Sbjct 256780 CAAATCCCAGGGCTCTACCCTGGACAAGCGGTGGAAACTTCCAAGCTGGAGTACGGTAGG 256839 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 |||| |||||| | ||| |||||||||||||||||| || | | |||||||| || Sbjct 256840 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 256899 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||| || |||||| | | |||||||||||| ||||||| ||||||| || | Sbjct 256900 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 256959 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 | |||||||||| ||||||| ||||||||||||| |||||||| Sbjct 256960 GGTTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGG 257004 >seq59 Length=835084 Score = 156 bits (172), Expect = 1e-35 Identities = 244/346 (71%), Gaps = 16/346 (5%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA------G 55 ||| ||||| ||||||| | |||||| |||||||||||||||||||| ||| | Sbjct 28863 ACTCGAGGAAGAAGCCCTGACTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGTGGGAGG 28922 Query 56 GGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCA 115 ||||| || || | | |||| ||||||||||||||| |||||| || | || Sbjct 28923 GGGGCAAGTATTCTTCAGAATGACTGGGCGTAAAGGGAACGTAGGCTGTGAATCGGGTTG 28982 Query 116 GAGGTGAAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAG 171 | ||||||| | | | || | | ||| |||| | ||||| | || || ||| Sbjct 28983 AAAGTGAAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAG 29036 Query 172 TGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAA 231 || || | ||||||||| | |||||| |||||||| | |||| | | ||||| Sbjct 29037 TGAGACAGATGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCAGAGATCTACGAAGGAA 29096 Query 232 CACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGG 291 | ||| | |||||| ||| |||| || ||||||| || ||||||| ||||| Sbjct 29097 CGCCAAAAGTGAAGGCAGCTCTCTGGGTCCCTACGGACACTGGGGTGCGAAAGCATGGGG 29156 Query 292 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||| ||| ||||||||||||| |||||||| || |||||| |||| Sbjct 29157 AGCGAACGAGATTAGATACCCTAGTAGTCCATGCTGTAAACTATGA 29202 >seq330 Length=490573 Score = 145 bits (160), Expect = 2e-32 Identities = 247/353 (70%), Gaps = 5/353 (1%) Strand=Plus/Minus Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||||||||||||||| | ||||||||||| || |||||||| || ||||||| | Sbjct 376416 GCAAGCGTTATCCGGAATGATTGGGCGTAAAGTGTCTGTAGGTGGCTTTTTAAGTCTGTC 376357 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGA 178 || ||| || |||||||||| ||| || | |||||| | | |||||| | Sbjct 376356 GTCAAATCTTAAGGCTCAACCCTGGGCAGGCGGTGGAAACTACCAAGTTAGAGTATGATA 376297 Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 |||||| |||||| || ||||||| ||||||||||| || | || |||| Sbjct 376296 GGGGCAGAGGGAATTTTCGATGGAGCGGTGCAATGCGTAGATCTTGAAAAGATTACCAAC 376237 Query 239 GGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAAC 298 || || | ||| || | | ||||||| |||| ||||||| ||||||| || Sbjct 376236 AGCAAAAACACTTTGTGGGGCCGACACTGACATTGAGAGACGAAAGCTAGGGGAGCGAAT 376177 Query 299 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT 358 ||||||||||| | ||||| | || || |||||| |||||||||| | | | || Sbjct 376176 GGGATTAGATACTCCAGTAGTTCTAGCTTTACACGATGGATACTAGGTG-CTATGTGTAT 376118 Query 359 --AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTAT-TCCACCTGGGGAGTA 408 | || | |||| | ||| ||||| ||||||| ||| ||||||| ||| Sbjct 376117 CGACCTG-TGTAGTGCTGTAGCTAACGCGTTAAGTATATCCCCCTGGGGCGTA 376066 >seq764 Length=663964 Score = 73.4 bits (80), Expect = 1e-10 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 280 GAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||| ||||||| |||| |||||||||||||||||||||| || ||||| ||||| Sbjct 311136 GAAAGCATGGGGAGTGAACATGATTAGATACCCTGGTAGTCCATGCTGTAAATGATGA 311193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203003794176