Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6087 302 9e-80 seq1835 291 2e-76 seq678 284 2e-74 seq5529 269 5e-70 seq252 140 6e-31 seq328 111 3e-22 seq868 84.2 4e-14 >seq6087 Length=58568 Score = 302 bits (334), Expect = 9e-80 Identities = 227/263 (86%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 68 CCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| ||||||||||||||||| | ||| | ||| | ||||||||||||||||||| ||| Sbjct 14255 CCGCCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACCGGT 14197 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 14196 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTC 14137 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 14136 TATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 14078 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct 14077 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGT 14018 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 14017 TGACTACGTCCCTGCCCTTTGTA 13995 Score = 255 bits (282), Expect = 1e-65 Identities = 193/226 (85%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 31573 GGATGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGGTGTTCTGGGCCGCACACGCGC 31514 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 |||||||| | |||||||| || ||||||||| ||| | |||||||||| | || Sbjct 31513 TACACTGATGTATTCAACGAGTCTATTGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAA 31455 Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 | | ||||| |||||||||| |||||||||| ||| ||||||||||||||| |||||| Sbjct 31454 ATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGT 31395 Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | ||||||| | |||||||| |||||||||||| |||||| Sbjct 31394 AAGCGTGAGTCATCAACTCGCGTTGAGTACGTCCCTGCCTTTTGTA 31349 >seq1835 Length=198957 Score = 291 bits (322), Expect = 2e-76 Identities = 224/262 (85%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 52628 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 52686 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| Sbjct 52687 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCACGCTACACTGATGTATTCAACGAGT 52746 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 52747 CTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 52805 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||| ||| ||||||||||||| ||||||||| |||| Sbjct 52806 TCATTGCAATTGTTGGTCTTCAACGAGTAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 52865 Query 305 TTGATTACGTCCCTGCCCTTTG 326 |||| || |||||||||||||| Sbjct 52866 TTGACTAAGTCCCTGCCCTTTG 52887 >seq678 Length=338508 Score = 284 bits (314), Expect = 2e-74 Identities = 223/263 (85%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 68 CCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 || |||||||||||||||||| | ||| | ||| | ||||||||| ||||||||||||| Sbjct 69228 CCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGCGGCAATAACAGGT 69170 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 69169 CTGTGATACCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTT 69110 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||| | | ||||||||||| | ||| | ||||| |||||||||| Sbjct 69109 TATAGCCTTGGCCGACAAGCTTGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 69051 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| ||||||||| ||| ||||||||| |||| Sbjct 69050 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGTGCGAGTCATCAGCTTGCGT 68991 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||| ||||||||| Sbjct 68990 TGACTACGTCCCTACCCTTTGTA 68968 >seq5529 Length=76990 Score = 269 bits (298), Expect = 5e-70 Identities = 218/260 (84%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||||| | ||| | ||| | |||||||||||||||||| |||| || Sbjct 24331 GCTTCTTAGAGGGACTATGGCCGCTTATGCCAA-GGAAGTTTGAGGCAATAATAGGTATG 24389 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||| ||||||||||| ||||||| | |||||||| || Sbjct 24390 TGATGCCCTTAGATGTTCTGGGTCGCACGCGCGCGACACTGATGTATTCAACGAGTCTAT 24449 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 ||||||||| ||| | |||||||||| | ||| | || || | |||||||| ||| Sbjct 24450 AGCCTTGGCCGATAGGCCCGGGTAATCTT-TGAAATTTCATCATGATAGGGATAGATCAT 24508 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| ||| ||||||| ||||||| ||||||||||| | ||||||||| |||||||| Sbjct 24509 TGCAATTGTTGGTCTTCAATGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCGTTGA 24568 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 24569 CTACGTCCCTGCCCTTTGTA 24588 >seq252 Length=683166 Score = 140 bits (154), Expect = 6e-31 Identities = 91/100 (91%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 || || |||||||||| |||||||||| ||| ||||||||||||||| |||||||||||| Sbjct 528351 TCATGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGC 528410 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| |||||||| ||||||||||||||||||| Sbjct 528411 GAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 528450 Score = 132 bits (146), Expect = 9e-29 Identities = 113/137 (82%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 83 GACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAG 140 |||||| | ||| | ||| | |||||||||||||||||||||||||||||||||||||| Sbjct 525922 GACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAG 525980 Query 141 ATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGG 200 |||||||||||| ||| ||||||||||||| | |||| ||| || ||||||||| Sbjct 525981 ATGTTCTGGGCCACACACGCGCTACACTGATGTATTCAACAAGTCTATAGCCTTGGCCGA 526040 Query 201 AAGGTCTGGGTAATCTT 217 ||| | ||||||||| Sbjct 526041 CAGGCCCAGGTAATCTT 526057 >seq328 Length=1310980 Score = 111 bits (122), Expect = 3e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 74 TCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATG 133 ||||||||||||||| | | | || | | ||||||||||| ||||||||||||| ||||| Sbjct 1075597 TCTTAGAGGGACTATGGCCGCTAGGCCAAGGAAGTTTGAGACAATAACAGGTCTTTGATG 1075538 Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||| |||||| ||||| ||||| ||||||||| Sbjct 1075537 CCCTTATATGTTCCGGGCCACACGCATGCTACACTG 1075502 >seq868 Length=567557 Score = 84.2 bits (92), Expect = 4e-14 Identities = 87/113 (77%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 108 TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC 167 ||||||| ||||| |||| ||| ||||||||||||||| |||||||||||| ||||||| Sbjct 237034 TTTGAGGGAATAATAGGTTTGTAATGCCCTTAGATGTTTTGGGCCGCACGCAAGCTACAC 236975 Query 168 TGACAGAG---CCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTT 217 || | || ||||| || ||||||||| ||| | ||||||||| Sbjct 236974 ---CATTGTTTTCAGCGAGTCTATAGCCTTGGCCGATAGGCCCAGGTAATCTT 236925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947045540096