Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1512 176 2e-41 seq1443 168 2e-39 seq850 77.0 1e-11 >seq1512 Length=221874 Score = 176 bits (194), Expect = 2e-41 Identities = 395/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 16878 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 16819 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 16818 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 16759 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 16758 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 16699 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || || | || || ||| | || |||| |||||| ||||||||| Sbjct 16698 CCGAAATGCGTTGAG---GCGCATC-AGT-TGACTGTACATCTAGGGGTAAAGCACTGTT 16644 Query 237 ATGGCTAGGGGGTCAT-TGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || | ||||| | | | ||||||| | |||||||| |||| | Sbjct 16643 TCGG--TGCGGGTCGTGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 16586 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| ||||| | |||| | | | | Sbjct 16585 CCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGATGATGGGGGATAAGCTTCATCGTC 16526 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 16525 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTTAGTGATA--AA 16468 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | || ||||| | |||| ||| || | ||||||| || | || ||||| Sbjct 16467 GGAGGTAGGGGTGTAGAGACAACCAGGAGGTTTGCCTAGAAGCAGTCA-CCCTTGAAAGA 16409 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| | ||| || ||| | || | |||| |||| | Sbjct 16408 GTGCGTAATAGCTCACTGATTGAGCGCTCTTGCGCAAAAGATGAACGGG-GCTAAGCGAT 16350 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 16349 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 16308 >seq1443 Length=413265 Score = 168 bits (186), Expect = 2e-39 Identities = 396/586 (68%), Gaps = 44/586 (8%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| |||| Sbjct 398731 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAATCTGGGTGATCTATCCATT 398672 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| ||||| || |||| Sbjct 398671 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTTAAGAATT 398612 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 398611 AGTGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCTAACCCAGAGCTAGCTGGTTCTCC 398552 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 398551 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 398497 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 | ||| ||| | ||| ||||||| | |||||||| |||| | Sbjct 398496 TCAGTGCGGGCGGTGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 398439 Query 288 CATCAGTTTTACCG----------CGG-GAGTGAGGGCATGGGTGCTAAGGT---CCGTG 333 | ||| | || | ||| |||||| || | | |||| | |||| Sbjct 398438 CCTCAAAATAACAGGTGTCAAGGTCGGCCAGTGAGACAATTGTGGATAAGCTTCACCGT- 398380 Query 334 CCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAAC 393 ||||||| || || || || | ||||||||||||| ||||||| ||| ||| | | Sbjct 398379 --CGAGAGGGAAACAACCCAGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA- 398323 Query 394 TAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAA 453 || || || | ||| ||| ||| |||| ||| || | |||||||||| | || || Sbjct 398322 -AAGGAGGTAGGGGTGCAGAGATAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAA 398265 Query 454 AGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGT 513 |||||| |||| |||||| | ||||| | ||| || || | |||| |||| Sbjct 398264 AGAGTGGGTAATAGCTCATTGATCGAGCGCTATTGCGCCGAAGATGAACGGG-GCTAAGC 398206 Query 514 TGTCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 ||||||||||||||||||| | | ||| |||||||||||||| Sbjct 398205 GATCTACCGAAGCAGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 398161 >seq850 Length=639856 Score = 77.0 bits (84), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 407 TTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACA 466 |||| ||||||| |||| ||| || | |||||||||| | || ||||||||||||| | Sbjct 51633 TTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCC-TTGAAAGAGTGCGTAATA 51575 Query 467 GCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGC 526 ||||||| ||||| | || ||| || || | |||| |||| ||| ||||||| Sbjct 51574 GCTCACTGATCGAGCACTCTTGCGCTGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGC 51516 Query 527 AGTGGG 532 ||||| Sbjct 51515 TGTGGG 51510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689324476928