Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1512 165 3e-38 seq3416 159 1e-36 seq1443 120 1e-24 >seq1512 Length=221874 Score = 165 bits (182), Expect = 3e-38 Identities = 386/570 (68%), Gaps = 23/570 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| | |||||||||||||| ||| || ||||| | || || Sbjct 15141 TCGACGGGTGGGTCTTGAAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 15200 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 15201 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 15259 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 15260 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAGTTC 15319 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| | | | | ||| | | || || | |||| | Sbjct 15320 TAGATCTTCCAGAGTGGTATCTAACTGATGGCTCAGGCCCCCCCGGAAG-GAGGCCT--T 15376 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | | ||||||| || | || || || | || |||||| ||| | | |||| Sbjct 15377 CTTCGCCCTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTG 15434 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | | | | ||||||| || | | | Sbjct 15435 AAGCTTCATAGGGTCTTTCTGTCCAGGTACAGGTAGTCCGCATCTTCACAGACATGTCTA 15494 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 15495 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 15553 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 ||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||| || Sbjct 15554 AACTTACCCGACAAGAAATTTAGCTACCTTAGGACCGTTATAGTTACGGTCGCCGTTCAC 15613 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 15614 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 15667 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 15668 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 15697 >seq3416 Length=231096 Score = 159 bits (176), Expect = 1e-36 Identities = 378/559 (68%), Gaps = 23/559 (4%) Strand=Plus/Minus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71 |||| |||||||||||||||| ||| || ||||| | || || || | | || Sbjct 29728 GTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCCGGCCCGA 29669 Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131 || |||||||| |||||||||||| |||||||||| | || |||||| ||||| | Sbjct 29668 GGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCATAGAAACTGTCT 29610 Query 132 ACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATCCACTACGGTCA 188 ||| | |||||||| | || || || |||||||||| || | | || Sbjct 29609 ACCTGAGACTGTCCCTTGGCTCGTAGGTCCTGACACAAGGTTAGAGTTCTAGCTCTTCCA 29550 Query 189 GAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCATCATAGTCTCCC 245 |||||||| || | | ||| | | || || | |||| || | | | || Sbjct 29549 AAGTGGTATCCCACTGATGGCTCAGGCCCCCCCGAAAG-GAGGCCTTAT--TCGCCCTCC 29493 Query 246 ACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCGG- 302 ||||| || || || || | || | |||| ||| | ||||||||| | | Sbjct 29492 ACCTAAGCTGTGCAGGAAAGGCCC--AAAGGCAATCCCAGGGAATAGTGAAGCTTCATAA 29435 Query 303 GGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGC 362 ||||||| |||| | | | | ||||||| || | | ||||||||| || Sbjct 29434 GGTCTTTCTGTCCAGGTACAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC 29375 Query 363 CTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 421 || | ||||||| | || |||||||||| ||||||| ||||||||||||||||| Sbjct 29374 CTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGA 29316 Query 422 CAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAA 481 ||||||||||||||||||||||| ||||||||||| || ||||| || |||||||| Sbjct 29315 CAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCACCGTTCACCGGGGCTTCCG 29256 Query 482 TTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGG 541 | ||| ||| || || | | |||| | ||| ||||||| |||| ||| Sbjct 29255 CT-GCCGACTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGG 29202 Query 542 CAGGCGTCAGTCCGTATAC 560 |||||||||| || |||| Sbjct 29201 CAGGCGTCAGCCCCCATAC 29183 >seq1443 Length=413265 Score = 120 bits (132), Expect = 1e-24 Identities = 106/130 (82%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | | ||||||| | || |||||||||| || |||| |||| Sbjct 397347 ATTTCACCGAGCCTCTCTTCGAGACAGT-GCCCAGATCGTTACGCCTTTAGTGCGGGTCA 397405 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 |||||||||||| |||||||||||||||||||||| |||| |||||| || ||| || | Sbjct 397406 GAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCGTTAGAGTTACGACTGCCATTCA 397465 Query 470 CTGGGGCTTC 479 |||| ||||| Sbjct 397466 CTGGCGCTTC 397475 Score = 75.2 bits (82), Expect = 4e-11 Identities = 105/146 (72%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||| ||||||| || || | ||| || || || Sbjct 389466 TCGACGGGTGGGTCTTGCAGTCAATCTCCCTTCTGTCTTTGCGCTCGAGGCCCAATCTCC 389525 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 389526 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 389584 Query 121 TTAAACTACCCACCAGGCACTGTCCC 146 ||||| | ||| | |||||||| Sbjct 389585 AGAAACTGTCTACCTGAGACTGTCCC 389610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702122389632