Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1285 122 2e-25 seq1410 87.8 4e-15 seq156 78.8 2e-12 seq59 73.4 8e-11 >seq1285 Length=268354 Score = 122 bits (134), Expect = 2e-25 Identities = 147/199 (74%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| |||| |||||| ||||| ||| ||||| | | ||| |||| || Sbjct 256637 AAAAGAAGTTCACAACCCGTAGG-CCTTCTACCTCCACGCGGCATTGCTCCATCAGGCTT 256579 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| || ||||||||||| ||||||| ||| ||||||||||| Sbjct 256578 TCGCCCATTGCAGAAAATTCCCCATTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAG 256519 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 256518 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 256459 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 256458 GCCTCACCAACTAGCTAAT 256440 >seq1410 Length=511304 Score = 87.8 bits (96), Expect = 4e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || | | |||||| || ||||| ||||||||||||||||||||| ||| ||| Sbjct 480241 TCAGGCTTTTGGCCATTGCGGAAAATTCCCAACTGCTGCCTCCCGTAGGAGTCTGGGCCG 480300 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||| ||| ||||| || | ||||||| || Sbjct 480301 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 480336 >seq156 Length=790707 Score = 78.8 bits (86), Expect = 2e-12 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || || ||||| || ||||||||| |||||||||||||||||| ||| || Sbjct 597398 TCAGGCTTTCTCCCATTACGGAAAATTCCTCACCGCTGCCTCCCGTAGGAGTCTGGGCCA 597339 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||| ||| ||||| | | ||||||| || Sbjct 597338 TGTCTCAGTCCCAGTGTGGCTAATCATCCTCTCGGA 597303 >seq59 Length=835084 Score = 73.4 bits (80), Expect = 8e-11 Identities = 121/175 (69%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || ||||| | | ||||| || || | | |||||| |||| ||||| || Sbjct 28814 CCTTCTTCACTCACGTGATATTGCTGGATCGACCTTTTGCCCATTGTCCAAAATTCCCCA 28755 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 ||||| ||| || | ||||| || |||||||||||| | ||||| || | || Sbjct 28754 CTGCTCCCTTCCATGGGAGTCTGTGCCGTGTCTCAGTCATAGTGTGGCTGATCATCTGAA 28695 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | ||| |||| | |||| |||| | | |||| || |||||||||| Sbjct 28694 AAGACCAGCTAAGCATCATTGGCTTGGTGAGACTTTACGTGACCAACTACCTAAT 28640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068625710784