Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq339 230 2e-55 >seq339 Length=880584 Score = 230 bits (254), Expect = 2e-55 Identities = 581/873 (67%), Gaps = 14/873 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||||||| |||| ||| || ||| |||||||| ||||| || || ||||||| Sbjct 293706 TGTTCCCCATCCAGTACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCT 293647 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||||||||| | ||| | |||| ||||||| ||| | || Sbjct 293646 GGACCGCCGAGGAGGTCGATCTCTCCCAGGACACCCGCCACTGGGAAGCCTTAACCCCCG 293587 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || || ||||| || | | || ||||| ||||| || ||||| |||||| Sbjct 293586 ACGAGACCCACTTCATCTCTCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCC 293527 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 ||||| | | |||||| | ||| | || || | ||||| || |||| Sbjct 293526 TCGAGAACCTCGCCGGCCGTTTCATGACCGAGATCCAGGTCGCCGAGGCCCGCGCCTTCT 293467 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 ||||||||||||| || || ||||| ||||||| |||||||||||| | || |||| | Sbjct 293466 ACGGCTTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGTCTCCTGCTCGAGA 293407 Query 61364 CGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGG 61423 | ||||||| ||| | || | || | ||| | |||||||||||| | ||| Sbjct 293406 CCTACATCAAGGACTCAGAGGTCAAGCACCGCCTCTTCCACGCCATCGAGACGGTGCCGT 293347 Query 61424 CGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTG 61483 ||| |||| |||||||||||| |||| ||||||| ||| | | || || | Sbjct 293346 GCGTGGCCAGGAAGGCGGATTGGGCCATCAAGTGGATCAACAG---CTCCGAGACCTTCG 293290 Query 61484 GTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTTTGC 61541 || | ||| | | || ||||| || || || | || ||| ||| | | || Sbjct 293289 CCGAGAGGATCG-TCGCCTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTG- 293232 Query 61542 CGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTT 61601 | | || |||||| ||||||| || || || ||||| || || |||||| ||| ||||| Sbjct 293231 CTCCATATTTTGGCTGAAGAAGCGGGGTCTCATGCCAGGACTCACCTTCTCCAACGAGTT 293172 Query 61602 GATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCT 61661 | | ||||| ||||| || |||| || |||||||| ||| | | || || | | Sbjct 293171 GGTGTCACGTGACGAAGGTTTGCACTGCGATTTTGC----GTGCCTTATATACTCTCTGT 293116 Query 61662 GGTGAATC-GTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCG 61720 | | | | | | |||||||| ||| | | || || |||||||| || | Sbjct 293115 TGAGGAGCAAGCTGAGCGAGGAGCGCGTGAGGGGTATAGTGAAGGAGGCGGTGGAGATTG 293056 Query 61721 AACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAA 61780 || ||| ||| | |||||| |||| ||| | | | || ||||||||| | | Sbjct 293055 AAAGGGAGTTTGTCTGTGACGCGCTGCCGGTCGCTTTAGTTGGGATGAATTGTACGTTGA 292996 Query 61781 TGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGG 61839 || | ||||| || || |||||||| || | |||||||| | || ||||| | || | Sbjct 292995 TGGCCCAGTACATCGAGTTTGTTGCGGATAGGCTGTTGGTTGCGTTAGGGTACG-AGAAG 292937 Query 61840 ATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACG 61899 | || | || ||| || ||||||| ||||| | || || || | || ||||| Sbjct 292936 GTGTACGGTGTGACAAATCCGTTTGATTGGATGGAGCTCATCTCCTTGCAAGGGAAGACC 292877 Query 61900 AATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || || || ||||| | || || || |||||| Sbjct 292876 AACTTCTTTGAGAAGAGGGTTGGAGAATATCAA 292844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397488986714480