Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2265 479 3e-130 seq4464 114 1e-20 >seq2265 Length=185284 Score = 479 bits (530), Expect = 3e-130 Identities = 593/806 (74%), Gaps = 4/806 (0%) Strand=Plus/Plus Query 161731 CATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCA 161789 |||||| || || || || ||||||||||| || ||||| ||||| | ||| || Sbjct 94268 CATTCT-TTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCA 94326 Query 161790 ACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCAT 161849 | | || || || |||| |||||| || || ||||| |||||| || || || ||||| Sbjct 94327 ATTAGGTGGTCTGTGGACTTTTGTTGCTCTACACGGCACTTTCGGACTAATAGGTTTCAT 94386 Query 161850 GCTTCGTCAGTTTGAACTTGCTCGTCTTATCGGTATCCGTCCTTACAATGCTATTGCTTT 161909 ||| ||||| |||||||||||||| || | || || ||||| ||||| || | || Sbjct 94387 GCTACGTCAATTTGAACTTGCTCGATTTGTTCA-ATTCGACCTTATAATGCAATCACATT 94445 Query 161910 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTC 161969 ||||| ||| ||||| |||||||| || || || || ||||| ||||| ||||| Sbjct 94446 CTCTGTTCCAATTGCAGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGG 94505 Query 161970 CTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACA 162029 |||||||| ||||| ||||| || || ||||| || | ||| | || || | || Sbjct 94506 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCA 94565 Query 162030 AGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGG 162089 ||| || || |||||||| | ||||| || || || ||||| || | ||| | ||||| Sbjct 94566 AGGGTTTCATAATTGGACATTGAATCCATTTCATATAATGGGAGTTGACGGTGTATTGGG 94625 Query 162090 TGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGG 162149 | |||| | || | |||||||| |||| ||||| ||||| || | | ||||||| Sbjct 94626 CGCTGCTCTTCTATGCGCTATTCATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGG 94685 Query 162150 TGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGAT 162209 ||| |||||||| ||| | |||||| || | || |||| | || ||||| || || Sbjct 94686 TGATGGTGCAAATACATTCTATGCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAAT 94745 Query 162210 GGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTG 162269 ||| ||||| ||||| || ||||| || || || || ||||||||| ||||| ||||| Sbjct 94746 GGTCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTG 94805 Query 162270 GTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTAT 162329 ||| |||||||||||| | || || || || | ||| | |||| || || |||| | Sbjct 94806 GTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGT 94865 Query 162330 TATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGC 162389 | || || ||||| || || ||||| || ||||| || |||||||| ||||||||||| Sbjct 94866 AGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGC 94925 Query 162390 GGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCG 162449 | | ||||| |||||||| || ||||||||||| ||||| || || || |||||| |||| Sbjct 94926 GAAAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCG 94985 Query 162450 TGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCT 162509 | | ||| |||| | ||||| || ||||| ||| || ||||||||||||| ||||| Sbjct 94986 TCCTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 95045 Query 162510 GCCTAGAGGTAACGCACTGTGAATGG 162535 ||| | || ||||| || | ||||| Sbjct 95046 GCCCCGTGGAAACGCTCT-TTAATGG 95070 >seq4464 Length=199901 Score = 114 bits (126), Expect = 1e-20 Identities = 196/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 162232 TCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTC 162291 || || ||||| || |||||||| ||||| ||| | |||||||||||| | || Sbjct 140316 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAAAGTTAAGTACATTTCTTTATGTTATTT 140257 Query 162292 GTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGA-CTCGCTCTTAATCT 162350 || || | ||| | |||| || ||| || | || | | || | ||| || || Sbjct 140256 GTACCACTATCCGGTTTATGGATGAGCTCTCTC-CAAGTAGTCAATCTAGGTCTAAACCT 140198 Query 162351 TCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAAC 162410 | |||||| | ||| || | ||| || ||||||||| || | ||||| |||||||||| Sbjct 140197 ACATGCTTATGTCTTCGTTTATCAAGAAATTCGTGCAACGAAATATCCTAAATTTGAAAC 140138 Query 162411 CTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGA 162470 || ||| ||| |||||||| || || |||||| ||| ||| ||| || | || Sbjct 140137 TTTTTACGTCAATAATATCCTATTAAACGAAGGTATTCATGCTTGGATGTTAATTCAAGA 140078 Query 162471 TCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCC 162512 |||| | ||| | ||| || ||||| |||||| ||||| || Sbjct 140077 TCAATCTCATAAAAACCTTATATTCTTTGAGGAGGTTCTACC 140036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551263608894600