Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq2265 439 3e-118 seq1633 107 2e-18 seq6680 89.7 7e-13 >seq2265 Length=185284 Score = 439 bits (486), Expect = 3e-118 Identities = 599/834 (72%), Gaps = 3/834 (0%) Strand=Plus/Plus Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || || || || || || ||| || || | | | |||||| | | |||| |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 |||||| | ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG- 190345 || || ||||| |||||| ||||| || |||||||| ||||| |||||||| || || Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 190346 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 190405 | | || || || ||||| ||||| || | ||||||| ||| || || |||||||| Sbjct 94412 TTTGTTCA--ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGT 94469 Query 190406 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGG 190465 | || || || || || || |||||||| || |||||||||| ||||| || || Sbjct 94470 TTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 94529 Query 190466 TGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAA 190525 ||| ||||| || || || ||| ||||||| || || || || ||||| ||||| |||| Sbjct 94530 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 94589 Query 190526 CCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCA 190585 || || || || ||||| |||| ||| | |||| | || || || | || || || Sbjct 94590 TCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCA 94649 Query 190586 TGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGC 190645 ||||| ||||| || |||||||| | |||||||||||| ||||| || || | || Sbjct 94650 TGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGC 94709 Query 190646 ATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTC 190705 || || | || |||| |||| || ||||| ||||||||||| ||||| || ||||| Sbjct 94710 TTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTC 94769 Query 190706 TCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 ||||| ||||| |||| || ||||| | ||||| |||||||||||| | ||||| Sbjct 94770 CCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 94829 Query 190766 TCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 190825 || || | ||| | |||| | |||| | | ||||| ||||| ||||| || Sbjct 94830 ACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACG 94889 Query 190826 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 190885 ||| |||||||| || || || || || | ||||| ||||||| || || |||||||| Sbjct 94890 TGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTT 94949 Query 190886 TTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCA 190945 ||||| |||||||| || || || |||||| ||||| | ||| |||| || ||||| Sbjct 94950 CTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCA 95009 Query 190946 ACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || ||||| || || |||| || || || || |||| | || |||||||| Sbjct 95010 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq1633 Length=412253 Score = 107 bits (118), Expect = 2e-18 Identities = 244/363 (67%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCT 188931 ||| | |||| ||| || ||| ||||| ||||| ||||||||||||| | | || Sbjct 238526 ACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACT 238467 Query 188932 GCAACCATCTG-CTTCATCGTCGCCTTTGTC---GCTGCACCCCCTGTAGACATTGATGG 188987 |||| | |||| || || ||| ||||| ||| | || | |||| ||||| || Sbjct 238466 GCAA-CTTCTGTATTTATTATCG---TTGTCATTGCTACTCCTTCAATAGATATTGACGG 238411 Query 188988 CATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGT 189047 || || ||||| || | | || || | |||||||||| || || |||||||| | Sbjct 238410 TATTCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCAT 238351 Query 189048 TGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACT 189107 | | ||| | || || || ||| | | ||| ||||| | || ||||| || || | Sbjct 238350 TATTCCTACTTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGT 238291 Query 189108 CGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGG 189167 | ||| ||| | ||||| || |||||| | | || | || | || || | | || Sbjct 238290 TGCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGG 238231 Query 189168 CATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTG 189227 | | |||||||| ||| |||||||||| || |||| | |||||||| ||||| Sbjct 238230 CGTAGCTTGTTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTG 238171 Query 189228 GAT 189230 ||| Sbjct 238170 GAT 238168 >seq6680 Length=52110 Score = 89.7 bits (98), Expect = 7e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 190599 GAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACA 190658 |||| || ||| | |||||||||||| ||||| || || || || || | || Sbjct 10923 GAGATTATTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACT 10864 Query 190659 CAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGT 190718 |||| ||||| || ||||| ||||||||||| |||| || ||| | ||||||||||| Sbjct 10863 CAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGCCGCAAATCTTTGGG 10804 Query 190719 GTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 ||| ||| |||| ||||| | |||||||||| | ||||| Sbjct 10803 GTTTATTTCTTCAATATTCATTGGTTACGTTTCTTTATGTTATTTGT 10757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633950750718000