Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq2265 470 2e-127 seq1633 176 5e-39 seq6680 107 2e-18 seq6120 93.3 5e-14 >seq2265 Length=185284 Score = 470 bits (520), Expect = 2e-127 Identities = 607/837 (73%), Gaps = 1/837 (0%) Strand=Plus/Plus Query 164067 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 164126 || || || || || || ||| || || | | | |||||| | | |||| |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 164127 CCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTG 164186 ||||| | || || || || | | | ||||| ||| | || || || ||| ||||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 164187 GCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGT 164246 || | ||||| |||||| || || ||||||||||| || || |||||| |||| || Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 164247 CTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTC 164306 |||| || || || || ||||| || | ||||||| ||| ||||| || ||||| Sbjct 94412 TTTGTTCA-ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGTT 94470 Query 164307 AGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGG 164366 || ||||| || || || || || || ||| ||||||||||||| || ||||| Sbjct 94471 TCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 94530 Query 164367 GTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAAC 164426 || || || || || ||||| || | || ||||||| || ||||| |||||| | || Sbjct 94531 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAT 94590 Query 164427 CCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCAT 164486 || || ||||| ||||| |||| || | | || | ||||||||| || ||||||||| Sbjct 94591 CCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCAT 94650 Query 164487 GGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCA 164546 |||||||| || || |||||||| |||||||||||||| ||||||| ||| | || Sbjct 94651 GGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGCT 94710 Query 164547 TTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCT 164606 || | || ||||||| |||| ||||| || ||||||||||| |||||||| ||||| Sbjct 94711 TTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCC 94770 Query 164607 CAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTT 164666 || || ||||| |||||||| |||||| |||||||| || ||||||||| | ||||| Sbjct 94771 CAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 94830 Query 164667 CCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGT 164726 || || | || | |||| || || | || | ||||||| || || || || ||| Sbjct 94831 CCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACGT 94890 Query 164727 GCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTC 164786 || ||||| || || |||||||| ||| | ||||| | ||||| ||||||||||| ||| Sbjct 94891 GCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTTC 94950 Query 164787 TATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAG 164846 || || || || || || | || ||||| | ||| | |||||||| | ||| ||| Sbjct 94951 TACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCAG 95010 Query 164847 CCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || || ||| || |||| || ||||| ||||| || | || ||||| || ||| Sbjct 95011 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCTTTAA 95067 >seq1633 Length=412253 Score = 176 bits (194), Expect = 5e-39 Identities = 263/368 (71%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 160604 TCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTG 160663 ||||||| ||| ||||| ||||| |||||||||| ||| | ||| | ||||| |||| Sbjct 238515 TCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT-TCTG 238457 Query 160664 C-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCG 160722 ||||||| | || ||||| |||| | | || || |||||||| |||||||| | Sbjct 238456 TATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTG 238397 Query 160723 TTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCA 160782 || | | || || | |||||||||| || || |||||||| || ||||| |||| Sbjct 238396 TTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTG 238337 Query 160783 ACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCT 160842 || || ||| | | ||| ||||| | || ||||| || || ||| ||||||| | | Sbjct 238336 TAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTAT 238277 Query 160843 ACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACA 160902 ||||||| |||||||| | || | || | || || | | ||| | || |||| Sbjct 238276 ACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTGTTACA 238217 Query 160903 TGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCA 160961 |||| || ||||||||||| | ||| | || |||||||| ||||| ||| |||||| Sbjct 238216 TGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGAT-TGCTGTTGCA 238158 Query 160962 TATTCTGC 160969 ||||| || Sbjct 238157 TATTCAGC 238150 >seq6680 Length=52110 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 164499 GAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACT 164558 |||| || ||| |||||||||||||| ||||||| ||| || || | || ||| Sbjct 10923 GAGATTATTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACT 10864 Query 164559 CAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGT 164618 |||| ||||| ||||| || ||||||||||| |||| ||| ||| | || || ||||| Sbjct 10863 CAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGCCGCAAATCTTTGGG 10804 Query 164619 ATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGT 164665 || |||| ||||| | |||||| | ||||||||| | ||||| Sbjct 10803 GTTTATTTCTTCAATATTCATTGGTTACGTTTCTTTATGTTATTTGT 10757 >seq6120 Length=94228 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 161491 GTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATC 161550 |||||||||||||||||||||| ||||| || ||||||||||| ||||||||||| || | Sbjct 53900 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACC 53959 Query 161551 TCGCTGCTG 161559 | ||||||| Sbjct 53960 TAGCTGCTG 53968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559213987978800