Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq59 372 5e-101 seq483 118 2e-24 seq2693 95.1 2e-17 >seq59 Length=614426 Score = 372 bits (412), Expect = 5e-101 Identities = 231/245 (94%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| | Sbjct 438408 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATAACACGCGCTTACTAGGAATT-C 438351 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438350 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 438291 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct 438290 CCCGGTCCTGTCGGTCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGTGG 438231 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||| ||||| | |||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 438230 CCCAAAACATTTTAGGGCATCACAGACATGTTATTGCCTCAAACTTTCGTGGCCTAAAAG 438171 Query 241 GCCAT 245 ||||| Sbjct 438170 GCCAT 438166 >seq483 Length=42972 Score = 118 bits (130), Expect = 2e-24 Identities = 72/74 (97%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 803 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 860 Query 61 CTCGTTGAAGACCA 74 |||||||||||||| Sbjct 861 CTCGTTGAAGACCA 874 >seq2693 Length=753388 Score = 95.1 bits (104), Expect = 2e-17 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 ||||||| || |||| | | | ||| || ||| |||||||||||||||||| ||| ||| Sbjct 706192 TGAATACGCCAATGTAACACCCCTGCAGCGCAGCACATCTAAGGGCATCACAAACCAGTT 706251 Query 213 ATTGCCTCAAACTTCCGTGGCCTAAAAGGCCA 244 |||||||||||||||| ||| |||||| ||| Sbjct 706252 ATTGCCTCAAACTTCCATGGTTTAAAAGACCA 706283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751978050295