Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq59 214 3e-53 >seq59 Length=614426 Score = 214 bits (236), Expect = 3e-53 Identities = 199/249 (80%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| |||||||||| ||||||||||| | |||||| |||| |||| | ||||||||||| Sbjct 437571 ACTATTACTTTGAAGAAATTAGAGTGCTAAAAGCAAGCCTACGCTCTGTATACATTAGCA 437630 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | | || ||||| |||||| | ||| || ||||||| Sbjct 437631 TGGGATAACATTATAGGAT-TCCAGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGA 437689 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| | ||| ||||||||| | ||||| || ||||||||||||||||||||||||| Sbjct 437690 TTAACAAGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 437749 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| | ||| ||||| || |||||||||||||||||||||| |||||| Sbjct 437750 TGAAAGACGAACAAATGCCAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAT 437808 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 437809 AGTTGGGGG 437817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915172425024