Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq59 149 3e-33 >seq59 Length=614426 Score = 149 bits (164), Expect = 3e-33 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| ||||||||| |||||||| || |||| ||||||||| || || || Sbjct 439446 TCGCCGAGTCGGGTTGTTTGGAAATGCAGCCGCAAGTGGGCGGTAAATTTTGTCCAAGGC 439505 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 439506 TAAATACTGGTGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 439565 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||| Sbjct 439566 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTAAGGAAGGAAGCG 439610 Score = 134 bits (148), Expect = 6e-29 Identities = 95/109 (87%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| Sbjct 441208 GACCCGAAAGATGGTGAACTATGCTTGAACGGGGTGAAGCCTGAGGAAACTCTGGTGGAG 441267 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 || || |||| | ||| | ||||||||| ||||| | ||||||||||| Sbjct 441268 GCCCGAAGCGATACTGACATGCAAATCGTTCGTCTGACTTGGGTATAGG 441316 Score = 93.3 bits (102), Expect = 2e-16 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 |||| |||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 439824 CGGCTTGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 439883 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGTGCACCATCGA 521 ||||||| | ||| || ||| | | ||| |||| ||| | | ||||||| | ||| Sbjct 439884 AACCCGTACGGCGCAAGGAAGCTAATTGGA---GGGATCCCCTAGCGGGTGCATTACCGA 439940 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGG 569 || | | |||| | || || || || ||||||||||||| |||| || Sbjct 439941 CCAACCTTGATCTTTTGAGAAGGGTTCGAGTAAGAGCATACCTGTCGG 439988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079935371150