Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq392 224 3e-56 seq2499 163 7e-38 seq1603 82.4 2e-13 >seq392 Length=533060 Score = 224 bits (248), Expect = 3e-56 Identities = 291/401 (73%), Gaps = 2/401 (0%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||| Sbjct 313646 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 313705 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | | || ||||||| Sbjct 313706 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCC 313765 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||| |||| ||| || | | ||| | || |||| | || || | | Sbjct 313766 AGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGG 313825 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| ||| Sbjct 313826 GAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCA 313885 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||||| |||||||| || | |||||||| ||||||| || ||||||||| Sbjct 313886 CTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGAT 313945 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG-- 368 |||| ||||||| ||| |||||||| ||||| | || | | | || || Sbjct 313946 ACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCA 314005 Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| |||| ||||||||||| ||| Sbjct 314006 GTGTTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 314046 >seq2499 Length=162655 Score = 163 bits (180), Expect = 7e-38 Identities = 236/330 (72%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 || |||| |||||||||| |||||||||||||||||||||| ||| ||||| ||| Sbjct 109835 AAGAAGCCCCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGGGGGGGCAAGTGTTCT 109894 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGAAATC 128 ||||||| ||| ||||||||| | | ||||||| | | || || ||||| Sbjct 109895 TCGGAATGACTAGGCGTAAAGGGCAAGTAGGCGGTGAATCGGGTTGAAAG---TGAAAGT 109951 Query 129 CCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGG 187 | | | || |||| | | ||| | | || ||| | ||| | || ||| | Sbjct 109952 CGC---CAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGGGTGAGACAAAGGAGA 110008 Query 188 GTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247 |||||||| | |||||| |||||| || | || | | ||||| |||| |||||| Sbjct 110009 GTGGAATTTCGTGTGTAGGGTTGAAATCCGCAAATCTACGAAGGAAGGCCAAAAGCGAAG 110068 Query 248 GCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||||| | ||||| || |||||| | ||||||| ||||||||||||||||||| Sbjct 110069 GCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCAAACAGGATTA 110128 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||| |||||||||| ||| |||||||| Sbjct 110129 GATACCGTGGTAGTCCATGCCGTAAACGAT 110158 >seq1603 Length=354005 Score = 82.4 bits (90), Expect = 2e-13 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 281 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACG 335 ||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||| Sbjct 171293 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACG 171239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289561144352