Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq118 118 1e-24 seq2404 107 3e-21 seq2223 98.7 1e-18 >seq118 Length=66824 Score = 118 bits (130), Expect = 1e-24 Identities = 175/244 (72%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 52547 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 52605 Query 66 TGTGTTTTT-AGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACAC 124 ||||||||| | |||||||||| | ||| || | | ||| | | | | || | Sbjct 52606 TGTGTTTTTTAATAAACAGTCGTTACCCCCTGGTATGTGCCGCTTTCCTAA--TGAAAAG 52663 Query 125 GTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCC 184 | || || |||||||||||| |||||||||||| ||||||| ||| |||| Sbjct 52664 AT--------AGGAGAT-CACCCCTTCTCCTGAAGTTACGGGGTCATTTTGTCGAGTTCC 52714 Query 185 TTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| Sbjct 52715 TGCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 52774 Query 245 GGTA 248 |||| Sbjct 52775 GGTA 52778 >seq2404 Length=885034 Score = 107 bits (118), Expect = 3e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 549309 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 549250 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || ||| ||||||||||| |||| Sbjct 549249 AAGCGCCCTAGTATACTCTACTTGTTCACTTGTGTCGGTTTGGGGTA 549203 >seq2223 Length=1004276 Score = 98.7 bits (108), Expect = 1e-18 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||| ||||||||||| |||||||||| ||||||| | |||| | Sbjct 785638 GGCACCCCTTCTCCCGTAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 785697 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | ||| | ||||||||||| | |||||||||||||| Sbjct 785698 CGCGCCCCTAGGCATTCTCTACCTACCTACCTGTGTCGGTTT 785739 Score = 77.0 bits (84), Expect = 5e-12 Identities = 84/110 (76%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGT--TCA 198 |||||||||||||||||||||| ||| ||||||||| ||||| | | ||| || Sbjct 533197 GGCACCCCTTCTCCCGAAGTTATAGGGAGATTTTGCCGGGTTCCTAAGAGAGAGTTGTCT 533256 Query 199 CCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||| | || ||||||||||||| | ||||||||||||| |||| Sbjct 533257 CCCG--CCTCTAGGTATTCTCTACCTACCTGCCTGTGTCGGTTTCGGGTA 533304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694379731549