Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq118 170 5e-40 seq114 168 2e-39 seq2737 161 3e-37 seq2404 84.2 6e-14 >seq118 Length=66824 Score = 170 bits (188), Expect = 5e-40 Identities = 283/409 (69%), Gaps = 26/409 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || |||||||||| | ||| | |||||||||| | || || Sbjct 52367 GCATCTTCACGGAGAATTCAATTTCAGCGGGTCCATGTCGGAGACAGCGGGTCAGTCTTT 52426 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| | |||||| ||||| | | ||||||||| ||||||||| ||| ||| Sbjct 52427 ACACCATTCTTATAGGTCGCTACTTATGCAAAAAGGAATTTTGCTACCTTAAGACAATTA 52486 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 ||||| |||||||||||| ||||||| || || ||||| |||| | | Sbjct 52487 GAGTTACTGCCGCCGTTTACTAGGGCTTCCATTAAAAGCTT--------ATAACACTTTT 52538 Query 193 AATT--AACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 || ||||||| |||||||||||| |||| || |||||| || || | || || Sbjct 52539 CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGC 52598 Query 251 AGAGTGCTGTG-TTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC 309 ||||| ||||| ||||||||||||||||| | |||||||| | | | | | | Sbjct 52599 AGAGTCCTGTGTTTTTTAATAAACAGTCGTTACCCCCTGGTATGTGCCGCTTTCCTAA-- 52656 Query 310 TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTT 369 | || || ||||| |||||||| |||||||||| | | ||| Sbjct 52657 -TGAAAAGATAGGAGATCACC------------CCTTCTCCTGAAGTTACGGGGTCATTT 52703 Query 370 TGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 || | ||||||| | | ||||||||||||||| | |||| |||||| Sbjct 52704 TGTCGAGTTCCTGCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 52752 >seq114 Length=1421314 Score = 168 bits (186), Expect = 2e-39 Identities = 176/231 (76%), Gaps = 10/231 (4%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 103983 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 104042 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||| Sbjct 104043 GTCGTTACACCATTCGTGCATGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 104102 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||| |||||| |||||||| || | ||||| |||| Sbjct 104103 CAGTTAGAGTTACTGCCGCAGTTTACTGGGGCTTCCATTCAAAGCTT--------ATAAC 104154 Query 187 CCCATCAATT--AACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTC 235 | | || ||||||| |||||||||||| |||| || |||||| || Sbjct 104155 ACTTTTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATC 104205 >seq2737 Length=743495 Score = 161 bits (178), Expect = 3e-37 Identities = 208/287 (72%), Gaps = 15/287 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| ||| | |||||||||| || Sbjct 44879 TACTCCGCATCTTCACGGAGAATTCAATTTCACCAGGTCCATGTCGGAGACAGCGGGGCA 44820 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||| || |||||| ||||| | |||||||||||||||||||||| | Sbjct 44819 GTCGTTACACCATTCATGTAGGTCGCTACTTATGCAACAAGGAATTTCGCTACCTTAGAA 44760 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | ||| ||||| |||||||||||| |||||||| || | ||||| ||| Sbjct 44759 CAATTAGAGTTACTGCCGCCGTTTACTGGGGCTTCCATTCAAAGCTT--------ATAA- 44709 Query 187 CCCATCAATTAACCTTCCG-GCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245 || || ||||||| | | ||||| |||| || ||||| || || | Sbjct 44708 -----CACTTTTCCTTCCGACCTTCCAGCAGGTGTCAGACTTTATACATCGTGTTACCAC 44654 Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 || ||||||| || |||||||||||||||||||| | |||||||| Sbjct 44653 TTAGCAGAGTCCTATGTTTTTAATAAACAGTCGCTACCCCCTGGTAT 44607 >seq2404 Length=885034 Score = 84.2 bits (92), Expect = 6e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | | ||||||| ||||||||| | ||||||||||||| Sbjct 549304 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCG 549245 Query 403 CCTTGGTATTCTCTAC 418 || | |||| |||||| Sbjct 549244 CCCTAGTATACTCTAC 549229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260762012096