Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq118 194 4e-47 seq114 188 2e-45 seq2737 161 2e-37 seq2404 78.8 2e-12 >seq118 Length=66824 Score = 194 bits (214), Expect = 4e-47 Identities = 258/357 (72%), Gaps = 21/357 (6%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||| || ||| || ||||||| | | || || Sbjct 52367 GCATCTTCACGGAGAATTCAATTTCAGCGGGTCCATGTCGGAGACAGCGGGTCAGTCTTT 52426 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| | ||||| ||||| | | ||||||||| ||||||||| ||| ||| Sbjct 52427 ACACCATTCTTATAGGTCGCTACTTATGCAAAAAGGAATTTTGCTACCTTAAGACAATTA 52486 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||| ||||||||||||| |||||| || | ||| | ||||| | Sbjct 52487 GAGTTACTGCCGCCGTTTACTAGGGCTTCCATTAAAAGCT--------TATAACACTTTT 52538 Query 187 CCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 |||| |||||||||||||||||||| ||||| ||||||||||| || | ||||||| Sbjct 52539 CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGC 52598 Query 245 AGAAACCTGTG-TTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC----- 298 ||| |||||| ||||| |||||||||| | ||| | | ||| || | | Sbjct 52599 AGAGTCCTGTGTTTTTTAATAAACAGTCGTTACCCCCTGGTATGTGCCGCTTTCCTAATG 52658 Query 299 -ATAGACAGG----CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCT 350 | ||| ||| |||||||||||| ||||||||||||||||||| ||||||||| Sbjct 52659 AAAAGATAGGAGATCACCCCTTCTCCTGAAGTTACGGGGTCATTTTGTCGAGTTCCT 52715 >seq114 Length=1421314 Score = 188 bits (208), Expect = 2e-45 Identities = 191/249 (77%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 103983 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 104042 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| |||| ||||| |||||||||||||||||||||||||| Sbjct 104043 GTCGTTACACCATTCGTGCATGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 104102 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| ||||| |||||||||||||| |||| ||| | |||| Sbjct 104103 CAGTTAGAGTTACTGCCGCAGTTTACTGGGGCTTCCATTCAAAGCT--------TATAAC 104154 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | | |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 104155 ACTTTTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 104214 Query 239 CTTAGCAGA 247 ||||||||| Sbjct 104215 CTTAGCAGA 104223 >seq2737 Length=743495 Score = 161 bits (178), Expect = 2e-37 Identities = 201/276 (73%), Gaps = 17/276 (6%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | |||||||||| ||| || ||||||| | | Sbjct 44879 TACTCCGCATCTTCACGGAGAATTCAATTTCACCAGGTCCATGTCGGAGACAGCGGGGCA 44820 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||| || ||||| ||||| | |||||||||||||||||||||| | Sbjct 44819 GTCGTTACACCATTCATGTAGGTCGCTACTTATGCAACAAGGAATTTCGCTACCTTAGAA 44760 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | ||| |||||| |||||||||||||||||||| |||| ||| | |||| Sbjct 44759 CAATTAGAGTTACTGCCGCCGTTTACTGGGGCTTCCATTCAAAGCT--------TATAAC 44708 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | | |||| |||||||| ||||| ||||| |||||||||| || | | Sbjct 44707 ACTTTTCCTTCCGACCTTCCA-------GCAGGTGTCAGACTTTATACATCGTGTTACCA 44655 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 ||||||||| ||| ||||||| |||||||||||| Sbjct 44654 CTTAGCAGAGTCCTATGTTTTTAATAAACAGTCGCT 44619 >seq2404 Length=885034 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 549309 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTC 549252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062367989888