Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq392 484 2e-134 seq2499 179 1e-42 seq65 161 3e-37 seq725 131 5e-28 seq324 98.7 3e-18 seq414 78.8 3e-12 >seq392 Length=533060 Score = 484 bits (536), Expect = 2e-134 Identities = 408/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 314044 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 314103 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 314104 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 314163 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 314164 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 314221 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 314222 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 314281 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 314282 CAACGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 314341 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 314342 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 314401 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 ||||||| |||| |||||||| ||| || |||| ||| || |||||||||||||| Sbjct 314402 AAAGGGCCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTG 314461 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 314462 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 314521 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 314522 CGGTGAATTCGTTCCCG 314538 >seq2499 Length=162655 Score = 179 bits (198), Expect = 1e-42 Identities = 182/236 (77%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||| | |||| || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 110844 GACTGTCAGTGATGTACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 110903 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 110904 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 110963 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| |||||||||||| | |||||| Sbjct 110964 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGT 111022 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 ||||| ||||||||||| ||||||||||| |||||||| || |||| |||| Sbjct 111023 AGGAATTGCTAGTAATCGCGGATCAGCATGCCGTGGTGAATATGTACCCGGGCCCT 111078 Score = 134 bits (148), Expect = 4e-29 Identities = 168/228 (74%), Gaps = 17/228 (7%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| ||||||||||||||| ||||||| || | |||||||||||||||||||||| Sbjct 110232 CGCAAGACCGAAACTCAAAGGAATCGACGGGGGCCTGTACAAGCGGTGGAGCATGTGGTT 110291 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||||| | |||||||||| ||||||| | ||| | ||| Sbjct 110292 TAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA----ACAAGA-- 110342 Query 127 TAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTGTCGTCA 179 | | ||| ||| || || | | ||||||| |||| || |||||||| Sbjct 110343 -AACCCTATCCTTAACGGGATGGTACTTACTTTCATACAGGTGCTGCAAGGCTGTCGTCA 110401 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 |||||||||||||||||| ||| |||||| ||| ||| |||||| Sbjct 110402 TCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACAAGCAAAACCCT 110449 >seq65 Length=68394 Score = 161 bits (178), Expect = 3e-37 Identities = 170/221 (77%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 276 TGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCT 335 ||| | || ||||||||||||||| ||| |||| || |||| ||||| ||| | ||| Sbjct 11153 TGATATACTGGAGGAAGGTGGGGATGACTTCAAGTCCACATGGCCCTTGTGAGCTAGGCC 11094 Query 336 ACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCC 395 |||||||||||||||||| | ||||||||| ||| | | | ||| ||| ||| || Sbjct 11093 ACACACGTGCTACAATGGCAATTACAAAGGGAAGCAAGGCTGTAAGGCAGAGCGAAT-CC 11035 Query 396 ATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGC-AACTCGACTATATGAAGCTGGAATCG 454 |||| | ||||||||||||||| || || ||||| | |||||| | |||||| | Sbjct 11034 GGAAAGATTGCCTCAGTTCGGATTGTTCTCAGCAAACTCAAAAATATGACGTTGGAATTG 10975 Query 455 CTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCC 495 |||||||||| |||| ||||||| ||||||||| || ||| Sbjct 10974 CTAGTAATCGCAGATAAGCATGCCGCGGTGAATATGTACCC 10934 >seq725 Length=479409 Score = 131 bits (144), Expect = 5e-28 Identities = 84/91 (92%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 5 ACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGG 64 ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 202696 ACCACAAG--TGAAACTCAAAGGAATTGACGGGGGGCCGCACAAGCGGTGGAGCATGTGG 202639 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACC 95 |||||||||| |||| ||||||||||||||| Sbjct 202638 TTTAATTCGATGCAAAGCGAAGAACCTTACC 202608 >seq324 Length=49984 Score = 98.7 bits (108), Expect = 3e-18 Identities = 79/94 (84%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATC 463 || |||||||||||||| || |||||||||| || ||||||| |||||||||||||||| Sbjct 38873 GTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATC 38932 Query 464 GTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 | | |||| ||| | |||||||| |||||||| Sbjct 38933 GCCGGTCAGCCATACGGCGGTGAATTCGTTCCCG 38966 >seq414 Length=520983 Score = 78.8 bits (86), Expect = 3e-12 Identities = 71/88 (81%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 410 AGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGAT 469 ||||||||||| | |||||||||| || ||||||| ||||||||||||||| | | | Sbjct 204230 AGTTCGGATTGCAAGCTGCAACTCGTCTGCATGAAGCCGGAATCGCTAGTAATTGCCGGT 204171 Query 470 CAG-CATGCTACGGTGAATACGTTCCCG 496 ||| | | | ||||||||| | |||||| Sbjct 204170 CAGCCTTACAACGGTGAATTCATTCCCG 204143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503954684480