Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq59 241 2e-61 seq2693 87.8 3e-15 >seq59 Length=614426 Score = 241 bits (266), Expect = 2e-61 Identities = 211/261 (81%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||||||| |||||| ||||| | ||||||||||||| Sbjct 438264 ACTCGTTGAATACATCAGTGTAGCGCGCGTGTGGCCCAAAACATTTTAGGGCATCACAGA 438205 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 | |||||||||||||||||| | | | || ||| | ||||||||| |||||||| || Sbjct 438204 CATGTTATTGCCTCAAACTTTCGTGGCCTAAAAGGCCATAGTCCCTTTAAGAAGCTAGTT 438145 Query 122 ACCAACC---ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | || ||| || ||| |||||| | | ||||||||||||||| |||| Sbjct 438144 GCGAAGGTATATACCTCCGCATAACTAGTTAGCATGCTGAGGTCTCGTTCGTTAAAGGAA 438085 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 438084 TTAACCAGAAAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATGGAATCA 438025 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| | |||| Sbjct 438024 AGAAAGAGCTCTCAGTTTGTC 438004 >seq2693 Length=753388 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 || || |||| | | | ||| || ||| |||||||||||||||||| ||| ||||||||| Sbjct 706198 CGCCAATGTAACACCCCTGCAGCGCAGCACATCTAAGGGCATCACAAACCAGTTATTGCC 706257 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||||||| | | ||| | | | |||||||| |||| Sbjct 706258 TCAAACTTCCATGGTTTAAAAGACCAAAACCCCTCTAACAAGC 706300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796776742653