Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1432 372 5e-101 seq59 363 3e-98 seq2362 356 4e-96 seq2548 347 2e-93 seq2283 217 3e-54 seq2278 210 4e-52 seq871 201 2e-49 seq2688 114 2e-23 seq1847 84.2 4e-14 >seq1432 Length=9756 Score = 372 bits (412), Expect = 5e-101 Identities = 259/293 (88%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||||| | | || ||||||||||||||||||||||||||||||| Sbjct 7844 TACTAGGTTGAATTACCATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 7786 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||| |||||||||||||||||||||||||| |||||||||||||||||| ||| | Sbjct 7785 CGACGATCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTTA 7726 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 7725 ATTCTGCTTCATAATGATAGGAAGAGCCGACATCGAAGGATAAAAAAGCAACGTCGCTAT 7666 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | Sbjct 7665 GAACGCTTGGCTGCCACAAGCCAGTAATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 7606 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || || | || ||||||||||| |||||||| ||||| |||| |||||| Sbjct 7605 TAATTTCAAAAGGTCTAAAGGATCGTTAGGCCACGTTTTCAGGGTTCGTATTC 7553 >seq59 Length=614426 Score = 363 bits (402), Expect = 3e-98 Identities = 257/293 (88%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||||| | | || ||||||||||||||||||||||| ||||||| Sbjct 432985 TACTAGGTTGAATTACCATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACTTGTCTCA 432927 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 432926 CGAGGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 432867 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| |||||| ||||||||||||||||||||||||||| |||||||||||||| | | Sbjct 432866 ATTATGCTTCACAGTGATAGGAAGAGCCGACATCGAAGGATAAAAAAGCAACGTCGTTGT 432807 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | Sbjct 432806 GAACGCTTGGCTGCCACAAGCCAATTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 432747 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| | || ||||||||||| |||||||| ||||||| ||| |||||| Sbjct 432746 TAAATTCAAAAGGTCTAAAGGATCGTTAGGCCACGCTTTCATTGTTCGTATTC 432694 >seq2362 Length=213369 Score = 356 bits (394), Expect = 4e-96 Identities = 250/284 (88%), Gaps = 1/284 (0%) Strand=Plus/Plus Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||||||||| | | || ||||||||||||||||||| ||||||||| | ||||||| Sbjct 211322 GAATTACCATTGCGAC-ACTGTCATCAGTAGGGTAAAACGAACCTGTCTTACAACGGTCT 211380 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||||| Sbjct 211381 AAACCCAGCTCACGTTCCGTATTGGTGGGTGAACAATCCAACACTTTGTGAATTCTGCTT 211440 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 | |||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 211441 CACAATGATAAGAAGAGCCGAAATCGAAGGATAAAAAAGCAACGTCGCTATGAACGCTTG 211500 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| Sbjct 211501 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTTAAATTCAA 211560 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || ||||||| ||| || |||| |||||| ||||||||||| Sbjct 211561 AAGGTCTAAAGGTTCGTCAGCCCACGCTTTCACGGTTTGTATTC 211604 >seq2548 Length=803341 Score = 347 bits (384), Expect = 2e-93 Identities = 249/283 (88%), Gaps = 3/283 (1%) Strand=Plus/Minus Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 ||||| ||||| | | || ||||||||||||||||||||||||||| || ||||||||| Sbjct 609667 AATTAGCATTGCGAC-ACT-TCATCAGTAGGGTAAAACTAACCTGTCGCACGACGGTCTA 609610 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||||||| |||| |||||||||||||||||| ||| | || ||||||| Sbjct 609609 AACCCAGCTCACGTTCT-TATTGGTGGGTGAACAATCCAACACTTGGTGTATCCTGCTTC 609551 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609550 ACAATGATGGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 609491 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||||||||||||||||||||||| ||||||||| |||||||||| | ||||| | Sbjct 609490 CTGCCACAAGCCAGTTATCCCTGTGGTTACTTTTCTGACACCTCTAGCATTAAATTAAAA 609431 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 609430 AGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 609388 >seq2283 Length=253045 Score = 217 bits (240), Expect = 3e-54 Identities = 181/224 (81%), Gaps = 13/224 (6%) Strand=Plus/Minus Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||||||||||| ||||||||||||| || ||||||| | | Sbjct 2020 AAACCCAGCTCACGTT-------------TGAACAATCCAACACTCGGTGAATTCTACAT 1974 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 | ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 1973 CACAATGATAGGAAGAGCCGACATCAAAGGATCGAAAAGCAACGTCGCTATGAACGCTTG 1914 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 ||||||||||||| ||||||| |||||||||||||||| ||||| |||| | ||||| Sbjct 1913 GCTGCCACAAGCCGGTTATCCATGTGGTAACTTTTCTGACACCTTTAGCTTTAAATTCAA 1854 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || |||| ||| || |||||||| |||||| ||| |||||| Sbjct 1853 AAGGTCTAACGGAACGTTAGGCCACGCTTTCACAGTTCGTATTC 1810 >seq2278 Length=261713 Score = 210 bits (232), Expect = 4e-52 Identities = 137/151 (91%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 || ||||||| |||||||| ||||||||||||||| | ||||||||||||||| || || Sbjct 66773 GTGTCATGACATTCTAAACCAAGCTCACGTTCCCTAATGGTGGGTGAACAATCCTACACT 66714 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 174 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 66713 TGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 66654 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 ||||||||||||||||||||||||||||||| Sbjct 66653 CGCTATGAACGCTTGGCTGCCACAAGCCAGT 66623 >seq871 Length=26230 Score = 201 bits (222), Expect = 2e-49 Identities = 139/156 (89%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 68 CTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGC 127 |||||| |||||||||||| |||| |||||||||||||||||| ||| ||||||||| Sbjct 1273 CTAAACT-AGCTCACGTTCCTTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGC 1331 Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1332 TTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTTGCTATGAACGCT 1391 Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 |||||||||||||| |||| |||| | |||| |||| Sbjct 1392 TGGCTGCCACAAGCTAGTTTTCCCCGCGGTAGCTTT 1427 >seq2688 Length=117909 Score = 114 bits (126), Expect = 2e-23 Identities = 82/92 (89%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||||| | | || ||||||||||||||||||||||||||||||| Sbjct 55265 TACTAGGTTGAATTACCATTGCGAC-ACAGTCATCAGTAGGGTAAAACTAACCTGTCTCA 55323 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||| ||||||||||||| |||||| Sbjct 55324 CGACGGTCTAATCCCAGCTCACGTT-CCTATT 55354 >seq1847 Length=329982 Score = 84.2 bits (92), Expect = 4e-14 Identities = 97/129 (75%), Gaps = 5/129 (4%) Strand=Plus/Plus Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCC----AGTTATCCCTGTGGTAACTTTTC 225 |||||| |||||||||||||| | ||||||||| ||| |||||| |||||| || Sbjct 212905 AACGTCACTATGAACGCTTGGTTCCCACAAGCCAGCTAGTAATCCCTAAAATAACTTCTC 212964 Query 226 TGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGT 285 | |||||| ||| || | ||| | |||||||||| || | ||||||||| | | Sbjct 212965 TAGCACCTTTAG-CTTATATTCAACATGTCTAAAGGATCATTATGTTACACTTTCACGAT 213023 Query 286 TTGTATTCA 294 ||||||||| Sbjct 213024 TTGTATTCA 213032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854374256928