Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1113 174 3e-41 seq2513 118 2e-24 seq2648 77.0 6e-12 seq2737 73.4 8e-11 >seq1113 Length=2548689 Score = 174 bits (192), Expect = 3e-41 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| ||||||||| ||||||||||| Sbjct 382218 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGTCCTCCCAAAAGGTAACGGAGGC 382159 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 382158 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 382100 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| ||||||||| |||||||| |||| ||||||| ||| Sbjct 382099 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACTAAAGTCGGCCTTAGTGATCCGACGG 382040 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 382039 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 381990 >seq2513 Length=158861 Score = 118 bits (130), Expect = 2e-24 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | ||| |||||||||||||||| Sbjct 48317 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTC 48258 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGG 318 || |||||||||||| |||||| || ||||| || ||| |||| |||| Sbjct 48257 GGCCTTAATGATCCGACGGTGCCGAGTGGAAGGGTCGTTGCTCAACGG 48210 >seq2648 Length=778764 Score = 77.0 bits (84), Expect = 6e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| || | Sbjct 106975 TGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCC 106916 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 106915 CGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 106869 >seq2737 Length=743495 Score = 73.4 bits (80), Expect = 8e-11 Identities = 157/232 (68%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| || |||||| |||||| |||| |||||||||| Sbjct 45050 CGGGACAATGCGAGGTGGGTAGTTTATCTAGGGCGGATGCCTCCTAAAGTGTAACGGAGG 45109 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| || | || | | || || | || || | ||| Sbjct 45110 TGTGCGAAGGTAGGCTCAAGCGTCTATTCTACTCGTGAGC-----GTAATGGTATAAGCC 45164 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 | ||||||| || | | | ||| | ||| ||||||||||| | || ||||| || Sbjct 45165 TACTTGACTGTGAGATCGACTGGTCGAACAGAAACGAAAGTCGGCCATAGTGATCTGGGA 45224 Query 289 GTGCTGAATGGAACGGCCGTCGCTC-GACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | |||||| Sbjct 45225 GTCCCGTGTGGAAGGGCTCTCGCTCAAACGGATCAAAGGTACGCCAGGGATA 45276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982370400288