Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq114 105 7e-21 seq2737 78.8 1e-12 >seq114 Length=1421314 Score = 105 bits (116), Expect = 7e-21 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 103958 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 104017 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| ||||||||||||||| |||| ||||| | Sbjct 104018 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCATGTCGCTACTTATGC 104077 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 |||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 104078 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCAGTTTACTGGGGCTTC 104137 >seq2737 Length=743495 Score = 78.8 bits (86), Expect = 1e-12 Identities = 120/180 (67%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| | |||| || |||||||||| || | | ||||||||| Sbjct 44904 CGGGGTCTTACCGTCTAGGTGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCA 44845 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||| || |||||| ||||| | Sbjct 44844 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCATGTAGGTCGCTACTTATGC 44785 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 |||||||||||||||||||||| || ||| ||||||||||||||| Sbjct 44784 AACAAGGAATTTCGCTACCTTAGAACAATTAGAGTTACTGCCGCCGTTTACTGGGGCTTC 44725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547184028087