Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq392 226 6e-57 seq2499 183 7e-44 seq436 118 2e-24 >seq392 Length=533060 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 313581 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 313523 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 313522 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 313463 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||||||||||||||||||||||| ||| | || | | Sbjct 313462 ACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCT 313403 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | || | |||||||| Sbjct 313402 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTTCTCAG-CCTACGGGGTATTAG 313357 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 313356 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 313299 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 313298 GTCCGCCACT 313289 >seq2499 Length=162655 Score = 183 bits (202), Expect = 7e-44 Identities = 158/193 (82%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| || |||||| |||| ||||||| |||||||||||||||||||| |||||| Sbjct 109684 CCTTCTT-CATTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 109627 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| || || |||||| || |||||||||||| |||||||| |||||||||| Sbjct 109626 CACTGCTGCCCCCGGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCG 109567 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 ||||||| || | ||| | | |||||| |||| |||| | |||||||| ||||| | Sbjct 109566 AAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACTTGACCAACTACCTAATACT 109507 Query 197 ACCTAGGCTCATC 209 || || |||||| Sbjct 109506 ACGCAGACTCATC 109494 >seq436 Length=518577 Score = 118 bits (130), Expect = 2e-24 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 104 CCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTT 163 |||||||||| | |||||||| |||||||||||||| |||||| || |||| ||||||| Sbjct 486450 CCGTGTCTCACTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTATTGATCATCGCCTT 486509 Query 164 GGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| ||| ||| ||||||||||||||||||| ||| Sbjct 486510 GGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 486544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071967700640