Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq118 129 2e-27 seq2283 111 6e-22 seq2504 109 2e-21 seq829 91.5 5e-16 seq2491 82.4 3e-13 seq1603 75.2 4e-11 >seq118 Length=66824 Score = 129 bits (142), Expect = 2e-27 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| |||||||||||| || | ||| ||||| || Sbjct 53855 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTTAGGCCATCGACATCATACGCTCTAC 53914 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 53915 TGAAATAATATTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 53974 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 53975 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 54034 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | | ||||||||||| ||||| |||||| | | |||||||| Sbjct 54035 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 54077 Score = 102 bits (112), Expect = 3e-19 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 482 TATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCG 541 |||| ||||||| |||| |||||||||||||||||||||||||||| |||||||| Sbjct 54274 TATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCG 54333 Query 542 GTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 |||| |||| || ||||||||| |||||||||| Sbjct 54334 GTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 54369 >seq2283 Length=253045 Score = 111 bits (122), Expect = 6e-22 Identities = 103/130 (79%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 |||||| || ||||||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct 237010 GGTTTCGTGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACT 237069 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | |||||||||||||||||||||| || ||| ||| |||| | |||||||| Sbjct 237070 ACTTCGCTATCGGTCACCAAGGAGTA--TAACCTTGCAAGGTAGTCCTTGCTGATTCACA 237127 Query 590 CGAAATTTCA 599 || ||| || Sbjct 237128 CGGGATTCCA 237137 >seq2504 Length=845393 Score = 109 bits (120), Expect = 2e-21 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||| |||| | Sbjct 152715 CTTCGACTGATTGTTTGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 152656 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 152655 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 152596 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 152595 GAGGGTGGTCCC 152584 >seq829 Length=27369 Score = 91.5 bits (100), Expect = 5e-16 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 139 TGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCC 198 ||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||||| Sbjct 10889 TGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCC 10948 Query 199 CTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 ||| ||||| |||||| || | |||| | | ||| |||||| ||||||| Sbjct 10949 CTAACCACAACTCATCCGCTGCTTCTTCATCATCAGTTTGTTCGGACCTCCAC 11001 >seq2491 Length=164460 Score = 82.4 bits (90), Expect = 3e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 ||||| ||||| ||||||||| ||||||||| ||||| | |||||||||||||| || Sbjct 138625 CCCCGATGGGGGTTCTTTTCACCCTTCCCTCACAGTACTACTTCGCTATCGGTCACCCAG 138566 Query 551 GAGTATTTAG 560 |||||||||| Sbjct 138565 GAGTATTTAG 138556 >seq1603 Length=354005 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 187 GGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCC 246 ||||||||||||||| ||||| ||||||||| | ||| | || || ||||||||||||| Sbjct 157703 GGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCC 157644 Query 247 TCCA 250 |||| Sbjct 157643 TCCA 157640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817545235712