Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2283 102 2e-19 seq2504 98.7 2e-18 seq118 91.5 4e-16 seq810 78.8 2e-12 seq2491 77.0 8e-12 seq59 75.2 3e-11 >seq2283 Length=253045 Score = 102 bits (112), Expect = 2e-19 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 ||||||||| | ||||||||||||||| | |||||||||||| || ||||||||||| Sbjct 237007 TACGGTTTCGTGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGG 237065 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT 388 ||||| ||| |||||||||| || |||| || ||||| | | | |||| | ||| Sbjct 237066 TACTACTTCGCTATCGGTCACCAAGGAGTA--TAACCTTGCAAGGTAGTCCTTGCTGATT 237123 Query 389 CAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || || || | ||||| || | ||||||| Sbjct 237124 CACACGGGATTCCACGTGCCCCATGCTACTCG 237155 >seq2504 Length=845393 Score = 98.7 bits (108), Expect = 2e-18 Identities = 101/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| |||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 152710 ACTGATTGTTTGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 152652 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 152651 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 152592 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 152591 GTGGTCCCCC 152582 >seq118 Length=66824 Score = 91.5 bits (100), Expect = 4e-16 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 ||||||||||| |||||||||||||||||| || | |||||||||| | || | || ||| Sbjct 54292 GGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTA 54351 Query 363 GCCTTGGAGGATGGTCCCCC 382 | ||| |||| ||||||||| Sbjct 54352 GGCTTAGAGGGTGGTCCCCC 54371 >seq810 Length=28298 Score = 78.8 bits (86), Expect = 2e-12 Identities = 96/129 (74%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 251 TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTT 310 |||||||||||| | |||||||||| | | |||||||||||| | ||||||||| Sbjct 11490 TCCCACTGCTTGAGATCTTACGGTTTCATGTTATATTTCACTCCCTGATG-GGGGTTCTT 11548 Query 311 TTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| | || ||||||| ||||| || |||| ||||| | | |||| || ||||| | Sbjct 11549 TTCACTCTTTCCTCACGCTACTACATCGCTATAGGTCACCCCGGAGTA--TAACCTTGCA 11606 Query 371 GGATGGTCC 379 | | |||| Sbjct 11607 AGGTAGTCC 11615 >seq2491 Length=164460 Score = 77.0 bits (84), Expect = 8e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| || ||||||||| |||||| ||| |||||||||| ||| ||||||| Sbjct 138617 GGGGTTCTTTTCACCCTTCCCTCACAGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 138558 Query 362 AG 363 || Sbjct 138557 AG 138556 >seq59 Length=614426 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| ||||||||| ||||||| |||| ||||||||| ||| |||||||||| Sbjct 439563 GTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCACCAGTATTTAGC 439504 Query 365 CTTGGA 370 |||||| Sbjct 439503 CTTGGA 439498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241562590592