Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq392 219 8e-55 seq2499 127 4e-27 seq436 107 4e-21 >seq392 Length=533060 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 313576 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 313517 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 313516 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 313457 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| ||||||| ||||||||||| |||||| | ||||||||| || | Sbjct 313456 CATCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 313397 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| | ||| | | || | ||||||||| Sbjct 313396 GCGGATTCCTCCTT------------TTGC--TTCTCAGCC--TACGGGGTATTAGCAGC 313353 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 313352 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 313294 Query 300 CCACT 304 ||||| Sbjct 313293 CCACT 313289 >seq2499 Length=162655 Score = 127 bits (140), Expect = 4e-27 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| || || |||||| Sbjct 109662 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCGGTGGGAGTCC 109603 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 109602 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 109543 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| | |||||||||||||| Sbjct 109542 CTTGGTCAGCCTTTACTTGACCAACTACCTAAT 109510 >seq436 Length=518577 Score = 107 bits (118), Expect = 4e-21 Identities = 167/236 (71%), Gaps = 16/236 (7%) Strand=Plus/Plus Query 69 GCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCT 128 ||||||||||| ||||| |||||| | ||| |||||| | || |||| |||| ||| || Sbjct 486449 GCCGTGTCTCACTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTATTGATCATCGCCT 486508 Query 129 TGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAA 188 |||| |||||| ||||||||||| |||||| | ||||||||| || | | || | Sbjct 486509 TGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCT--CGGGAGGAT 486566 Query 189 TCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAA 248 || | | ||| | ||| | | || | ||||||||| | ||| || Sbjct 486567 TCCT---------CCTTTTGC--TTCTCAGCC--TACGGGGTATTAGCAACCATTTTCAG 486613 Query 249 ACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 ||| |||| ||| || |||||||| || ||| |||||||||| |||| ||||| Sbjct 486614 CTGTTGTTCCCCTCCAAAGGGCAGGTT-CTTACGCGTTACTCACCTGTCCACCACT 486668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998369918208