Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq829 159 8e-37 seq2517 143 6e-32 seq118 123 6e-26 >seq829 Length=27369 Score = 159 bits (176), Expect = 8e-37 Identities = 181/238 (76%), Gaps = 11/238 (5%) Strand=Plus/Plus Query 169 CACTGACACG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGA 222 |||| ||||| ||||||||||||| | | ||| | ||||||||||||| || Sbjct 10504 CACTAACACGGAACGCTCCCCTACCGATGCTTTTTTACA---TCCCACAGCTTCGGCAGA 10560 Query 223 TAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCAC 282 ||| ||||| || ||| ||| ||| | | || || ||||||||||||| |||| Sbjct 10561 CCGCTTG-GCCCC-CTTCATCTTCGACGCAAGAGCGCTCGATCAGTGAGCTATTATGCAC 10618 Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCT 342 |||||||||| ||||| |||| | || |||||||||||| ||| ||| | | || |||| Sbjct 10619 TCTTTCAAGGGTGGCTTCTTCTAGGCAAACCTCCTGGTTATCTCTGCACCCCTACCTCCT 10678 Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || ||||||| || |||||||||||||||| ||||| ||| ||||||||||||| Sbjct 10679 TTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGTTGTTTCCCTCTCG 10736 >seq2517 Length=152566 Score = 143 bits (158), Expect = 6e-32 Identities = 143/184 (78%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 |||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 115835 GCTTCGATGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 115779 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 115778 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 115719 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||| | Sbjct 115718 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGTT 115659 Query 389 GTTT 392 |||| Sbjct 115658 GTTT 115655 >seq118 Length=66824 Score = 123 bits (136), Expect = 6e-26 Identities = 144/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 211 AGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAG 267 |||||||| | |||| ||||| |||||| |||| || ||| || |||||| Sbjct 53579 AGCTTCGGTGATCCACTTTAGCCCTCATACATTTTCGGTGCCATGGAG---CTAGACCAG 53635 Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTAC 327 ||||||||||||| |||| |||||||||| |||||||||| || ||| ||||||| | Sbjct 53636 TGAGCTATTACGCTTTCTTCAAAGGATGGCTTCTTCCAAGCCCACTTCCCGGTTGTCATC 53695 Query 328 GCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGC 387 || ||| |||||| ||||| ||| | || |||| ||||||| | ||| |||| Sbjct 53696 GCTCGATCACTTCCTTTTCCACTAAGTGATTGCTAAGGGACCTTAGCGTACGATATGGGA 53755 Query 388 TGTTTCCCTCTCG 400 | ||||||||||| Sbjct 53756 TATTTCCCTCTCG 53768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177564518912