Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq392 131 1e-28 seq2499 122 7e-26 seq65 91.5 1e-16 >seq392 Length=533060 Score = 131 bits (144), Expect = 1e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 314475 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 314416 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | |||||||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 314415 GATCGCGGCCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 314356 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 314355 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 314316 >seq2499 Length=162655 Score = 122 bits (134), Expect = 7e-26 Identities = 120/154 (78%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | Sbjct 111011 TCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACA 110953 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||| |||| | |||||||| ||||||| |||| ||||||||||||| Sbjct 110952 GCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA 110893 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGT 154 || |||||||||||||||||||||||||||| || Sbjct 110892 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGT 110859 >seq65 Length=68394 Score = 91.5 bits (100), Expect = 1e-16 Identities = 114/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 6 TTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTG 65 |||| || |||||||| ||| | | ||||| || ||| |||| ||| | | | Sbjct 11000 TTGCTGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCTGCCTTACAGCCTT 11058 Query 66 GCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGG 125 || |||| |||| | |||||||| ||||||| ||| | || |||||||||| || Sbjct 11059 GCTTCCCTTTGTAATTGCCATTGTAGCACGTGTGTGGCCTAGCTCACAAGGGCCATGTGG 11118 Query 126 ACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 |||||| ||||||||||||||||||| || | ||| Sbjct 11119 ACTTGAAGTCATCCCCACCTTCCTCCAGTATATCA 11153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415987857610