Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1113 273 3e-71 seq2349 174 2e-41 seq2737 168 1e-39 seq2733 168 1e-39 seq118 143 4e-32 seq16 120 5e-25 seq2648 87.8 3e-15 seq2374 73.4 6e-11 >seq1113 Length=2548689 Score = 273 bits (302), Expect = 3e-71 Identities = 225/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 381667 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 381726 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 381727 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 381786 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| ||| |||||||| |||||| ||||||||||||||| || Sbjct 381787 AGGGAAAGGTCCTCTCAATGCTCCAACGCCCACACCGGATATGGACCGAACTGTCTCACG 381846 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 381847 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 381906 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 381907 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 381939 >seq2349 Length=900663 Score = 174 bits (192), Expect = 2e-41 Identities = 169/217 (78%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| ||| || ||| |||||| | ||| ||| ||||| ||||| ||| | Sbjct 86441 AACTTAGCTGCCCGGCGCTGCTATTGGCATAAAAACCGGTACACCATAGGTTGTCCCAAC 86500 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCCACGACGGAT 162 || |||||||||||||| || ||||||| || | ||| || || ||| ||| Sbjct 86501 CCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGAT 86560 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| ||||||||||||| ||||||||| |||||| ||| ||| || ||| ||| |||||| Sbjct 86561 AGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTGAATCGGCGAA 86620 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259 || || |||||||||||||| ||||| |||||||||| Sbjct 86621 CAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATG 86657 >seq2737 Length=743495 Score = 168 bits (186), Expect = 1e-39 Identities = 184/243 (76%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 37 ATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGG 96 |||| | |||| ||||||| | || ||| ||||| ||||| || ||||| ||| Sbjct 45568 ATCCATACCAA-CTTAGCTGTCGGGCGCTGCTACTGGCATAACAACCAGTACACCATAGG 45510 Query 97 TTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCC 152 || | ||| ||| |||||||||||||| || |||||| || | ||| || || Sbjct 45509 TTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTTGCAGTTCTCCCTTTAACACC 45450 Query 153 CACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTT 212 | | |||||| ||| ||||||||| ||||||||| |||||| ||| | | || ||| Sbjct 45449 AATGGTAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCCAACTCACCTACCACTTG 45390 Query 213 AATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACA 272 ||| |||||||| || |||||||||||||| ||||| |||||||||| |||||| ||||| Sbjct 45389 AATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGACGAGTCGACA 45330 Query 273 TCG 275 ||| Sbjct 45329 TCG 45327 >seq2733 Length=108464 Score = 168 bits (186), Expect = 1e-39 Identities = 188/251 (75%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 98439 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 98498 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || |||||| || | |||| Sbjct 98499 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGCCTCCTCGCAGTTCTCCTT 98558 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| ||||| ||| ||||||||| |||||||| |||||| ||| ||| Sbjct 98559 TTAACACCAACGGTAAATAGGAACCAAACTGTCTCATGACGTTCTAAACCCAACTCACGT 98618 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||| ||| || | Sbjct 98619 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCGAGATATGATG 98678 Query 265 AGCCGACATCG 275 || ||| |||| Sbjct 98679 AGTCGATATCG 98689 >seq118 Length=66824 Score = 143 bits (158), Expect = 4e-32 Identities = 178/242 (74%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 37 ATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGG 96 |||| | |||| ||||||| ||| | ||| |||||| | ||| ||| ||||| ||| Sbjct 51677 ATCCGTACCAA-CTTAGCTGCCCGGTGCTGCTATTGGCATAAAAACCGGTACACCATAGG 51735 Query 97 TTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT---ACGCCC 153 || | | | ||| ||||||||||||| || ||||||| || | ||| || || Sbjct 51736 TTAGCCTAACCCATTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCCCCTTTAACACCA 51795 Query 154 ACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTA 213 | | |||||| ||| ||||||||| | | ||| |||||||| ||| ||| || ||| | Sbjct 51796 AAGGTAGATAGGAACCAAACTGTCTCACAATGTTATGAACCCAACTCACGTACCACTTGA 51855 Query 214 ATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACAT 273 || || ||||| | ||||||| |||||| ||||| |||||||||| || || ||||| Sbjct 51856 ATCGGTGAACAATCGAACCCTTAGGACCTTCTTCAACCCCAGGATGTGATGAATTGACAT 51915 Query 274 CG 275 || Sbjct 51916 CG 51917 >seq16 Length=73040 Score = 120 bits (132), Expect = 5e-25 Identities = 90/106 (85%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| ||||||||||||| ||||||||| |||||| ||| ||| || ||| ||| || Sbjct 6469 GATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTGAATCGGG 6528 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 ||||| || |||||||||||||| ||||| |||||||||| || || Sbjct 6529 GAACAACCAAACCCTTGGGACCTTCTTCAACCCCAGGATGTGAAGA 6574 >seq2648 Length=778764 Score = 87.8 bits (96), Expect = 3e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 198 CTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGA 257 ||| ||| || ||| ||| |||||||| || |||||||||||||| ||||| |||||||| Sbjct 106741 CTCACGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGA 106800 Query 258 TGAGACGAGCCGACATCG 275 || || ||| |||||||| Sbjct 106801 TGTGATGAGTCGACATCG 106818 >seq2374 Length=206107 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/107 (76%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 35 TTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAG 93 |||||| ||| |||| ||| |||||| | | | | |||| | ||||||| ||| || Sbjct 182712 TTATCCGCTCCGCACTTGGCTACCCAGCATTTACCGTGGGCACGATAACTGGTACACTAG 182653 Query 94 AGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAA 140 |||| | || |||||||||||||||||| ||| || |||||| || Sbjct 182652 AGGTGCGGCCTTCCCGGTCCTCTCGTACTGGGGAAAGGTCCTCTTAA 182606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780777209668