Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq392 264 3e-68 seq2499 163 7e-38 seq436 111 4e-22 >seq392 Length=533060 Score = 264 bits (292), Expect = 3e-68 Identities = 302/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 313601 ACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 313542 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 313541 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 313482 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || |||||| | ||||||||| Sbjct 313481 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCTCACCAACTAGC 313422 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| ||| Sbjct 313421 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTG--CTTCT 313375 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 313374 CAGCCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 313315 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 313314 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 313272 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 313271 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 313228 >seq2499 Length=162655 Score = 163 bits (180), Expect = 7e-38 Identities = 141/175 (81%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 |||||||||| |||||| || |||| ||| ||||| |||||||||| ||| |||||||| Sbjct 109684 CCTTCTTCATTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 109625 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| || || |||||| || |||||||||||| |||||||||||| |||||| Sbjct 109624 CTGCTGCCCCCGGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 109565 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 |||||||||| | ||| | | || ||| ||| |||| ||||||| ||||| Sbjct 109564 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACTTGACCAACTACCTAAT 109510 >seq436 Length=518577 Score = 111 bits (122), Expect = 4e-22 Identities = 166/232 (72%), Gaps = 13/232 (6%) Strand=Plus/Plus Query 105 CCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTA 164 |||||||||| | |||||||||||| |||||||||| ||||||||| |||| |||||| Sbjct 486450 CCGTGTCTCACTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTATTGATCATCGCCTT 486509 Query 165 GGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGC 224 ||| || ||| || | |||||||||||||| | | | | ||| | | ||| Sbjct 486510 GGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCC--TCGGGAG---- 486563 Query 225 CCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGG 284 || ||| ||| |||| ||| | || | ||||||||| ||| ||| ||| | Sbjct 486564 --GA--TTCCTCCT-TTTG--CTTCTCAGCCTACGGGGTATTAGCAACCATTTTCAGCTG 486616 Query 285 TTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACT 336 || | |||||||| ||||| ||| | | ||||||||| |||| ||||| Sbjct 486617 TTGTTCCCCTCCAAAGGGCAGGTTCTTACGCGTTACTCACCTGTCCACCACT 486668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222363169088