Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq392 320 5e-85 seq2499 140 1e-30 seq436 109 2e-21 >seq392 Length=533060 Score = 320 bits (354), Expect = 5e-85 Identities = 278/343 (81%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| |||||| |||||||||||||| |||||||||| | Sbjct 313410 CGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 313469 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 313470 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 313529 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 313530 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 313589 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||| | || ||| | | | ||||| |||||||||| | ||| Sbjct 313590 AGGCCCACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCCGGGGAAT 313649 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 313650 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 313709 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 313710 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 313751 >seq2499 Length=162655 Score = 140 bits (154), Expect = 1e-30 Identities = 136/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| | |||| |||| |||||| | | ||| |||| | || || Sbjct 109510 ATTAGGTAGTTGGTCAAGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 109569 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| || || ||||||||||||| Sbjct 109570 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACCGGGGGCAGCAGTGGGG 109629 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 ||| ||| ||||||||| |||||| ||| |||||| ||||||| || ||||| Sbjct 109630 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAATGAAGAAGG 109684 Score = 96.9 bits (106), Expect = 1e-17 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 447 || ||| | |||||||||||||||| |||||||||||||||||||||| |||||| | Sbjct 109828 CTCGAGTAAGAAGCCCCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGGGGGGGCAA 109887 Query 448 GCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | ||| | |||||| ||| ||||||||||| ||||| ||| Sbjct 109888 GTGTTCTTCGGAATGACT-AGGCGTAAAGGGCAAGTAGGCGGT 109929 >seq436 Length=518577 Score = 109 bits (120), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| ||||| |||| | Sbjct 486547 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAATAGCTGGT 486488 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGG 257 | |||||| ||||| |||||| ||| | |||||||||| Sbjct 486487 CCGAGAGGATGATCAGCCACACTGGGAGTGAGACACGG 486450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497554877312