Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq392 268 2e-69 seq2499 183 7e-44 seq1603 89.7 1e-15 seq2179 75.2 3e-11 >seq392 Length=533060 Score = 268 bits (296), Expect = 2e-69 Identities = 299/397 (75%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 313650 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 313709 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || |||||||| || ||||||| | || ||| | | || Sbjct 313710 GAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGG 313769 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||||| || || | |||||| | ||| |||| | | ||||||| ||||| Sbjct 313770 CTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAAT 313829 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||| |||||||||||||||||| || | | |||||||| |||||| || | Sbjct 313830 TTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCT 313889 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 ||||| | | |||||||||||| ||||||| ||||||| || ||||||||||||| Sbjct 313890 GCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCC 313949 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTG 371 ||||||| ||||||||||||| |||||||| | | | ||| || | | | ||| Sbjct 313950 CAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCCGTGCAGTG 314008 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| ||||| ||||||| || ||||||||||| Sbjct 314009 TTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 314045 >seq2499 Length=162655 Score = 183 bits (202), Expect = 7e-44 Identities = 246/339 (73%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 3 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 62 || ||| | |||||||||||||||| |||||||||||||||||||||| |||||| | Sbjct 109828 CTCGAGTAAGAAGCCCCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGGGGGGGCAA 109887 Query 63 GCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGA 122 | ||| | |||||| ||| ||||||||||| ||||| ||| | || | |||| Sbjct 109888 GTGTTCTTCGGAATGACTAGGCGTAAAGGGCAAGTAGGCGGTGAATCGGGTTGAAAGTGA 109947 Query 123 AAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGGA 178 ||| | | | || | | ||| |||| | ||||| | || || | ||| | Sbjct 109948 AAGTC---GCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCA---CTTGGGTGAGACA 110001 Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 || ||||||||| | |||||| | |||||| || | || | | ||||| ||| Sbjct 110002 AAGGAGAGTGGAATTTCGTGTGTAGGGTTGAAATCCGCAAATCTACGAAGGAAGGCCAAA 110061 Query 239 GGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAAC 298 |||||||| ||| |||| || ||| ||| || ||||||| |||||||||||| Sbjct 110062 AGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCAAAC 110121 Query 299 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||| |||||||||| |||||||||||||| Sbjct 110122 AGGATTAGATACCGTGGTAGTCCATGCCGTAAACGATGA 110160 >seq1603 Length=354005 Score = 89.7 bits (98), Expect = 1e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 267 GACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCC 326 ||| ||| || ||||||| |||||||| ||||||||||||||||||||||||||| ||| Sbjct 171305 GACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCC 171246 Query 327 GTAAACG 333 ||||||| Sbjct 171245 GTAAACG 171239 >seq2179 Length=299488 Score = 75.2 bits (82), Expect = 3e-11 Identities = 107/151 (71%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 97 TAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAA 156 || |||| || ||||||| | || ||| | | |||||||||| || || | ||| Sbjct 245467 TATGTGGCTTTTTAAGTCCGCTGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAA 245408 Query 157 ACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGT 216 ||| | ||| |||| | | ||||||| |||||| | ||| ||||||||||||||| Sbjct 245407 ACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGT 245348 Query 217 AGATATTAGGAGGAACACCAGTGGCGAAGGC 247 ||| | | |||||||| |||||| || Sbjct 245347 AGAGACCGTAAAGAACACCAACGGCGAAAGC 245317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203163747584