Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq59 266 6e-69 seq483 109 1e-21 seq2693 82.4 1e-13 >seq59 Length=614426 Score = 266 bits (294), Expect = 6e-69 Identities = 216/259 (83%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||| ||||||||| | || || | | | |||||||||||||||||| |||||| Sbjct 438150 GCTTCTTAAAGGGACTATGGCCTTTTAGGCCACGAAAGTTTGAGGCAATAACATGTCTGT 438209 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||| | ||||| |||||| ||||||||||||||||| | |||||||| || Sbjct 438210 GATGCCCTAAAATGTTTTGGGCCACACGCGCGCTACACTGATGTATTCAACGAGTCTATA 438269 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||| ||| ||| | |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 438270 GCCTTGACCGACAGGACCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 438328 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||| |||||||||||||||| |||||| |||||||| Sbjct 438329 GCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGTGTTATCAGCTCGCGTTGAC 438388 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 438389 TACGTCCCTGCCCTTTGTA 438407 >seq483 Length=42972 Score = 109 bits (120), Expect = 1e-21 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 ||| || ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||| Sbjct 878 TTAATGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACG 819 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 818 TCCCTGCCCTTTGTA 804 >seq2693 Length=753388 Score = 82.4 bits (90), Expect = 1e-13 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||| |||||||| | | | || || || ||||||||||||||||||||| ||| || Sbjct 706300 GCTTGTTAGAGGGGTTTTGGTCTTTTAAACC-ATGGAAGTTTGAGGCAATAACTGGTTTG 706242 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||||| ||| || ||| | | | |||| || Sbjct 706241 TGATGCCCTTAGATGTGCTGCGCTGCAGGGGTGTTACATTG 706201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947171460864