Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq118 149 2e-33 seq829 109 2e-21 seq1603 75.2 4e-11 >seq118 Length=66824 Score = 149 bits (164), Expect = 2e-33 Identities = 322/468 (69%), Gaps = 39/468 (8%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 54077 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 54018 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 54017 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 53958 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || |||| | ||||| |||| || | | || Sbjct 53957 AACCAAGATCGGATATAGCTGGTTTTCCGCGAATATTATTTCAGTAGAGCGT--ATGATG 53900 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | ||||||||||| |||||||| | |||| | |||||||| Sbjct 53899 TCGATGGCCTAAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTTGCCTTACCAAC 53840 Query 267 CCATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||| ||||| | || ||| |||||| || || ||||| Sbjct 53839 CCCAGGGAAACTTCGAATACAGGCCTAGATCGTTTTTAC----AGACAGACTTTTTGGGT 53784 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATC---AGCTAAGGCCCC---GA 374 |||| | ||| ||||||| ||| |||| |||| ||||||| ||| | Sbjct 53783 GCTATGATCCAAAGTCGAGAGG-GAAATATCC--CATATCGTACGCTAAGGTCCCTTAGC 53727 Query 375 AATGACAGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCT 432 ||| | || ||| || || |||| |||| || | |||| | ||| || |||| Sbjct 53726 AATCA---CTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCGGGAAGTGGGCT 53674 Query 433 TGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||| ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 53673 TGGAAGAAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 53627 >seq829 Length=27369 Score = 109 bits (120), Expect = 2e-21 Identities = 325/493 (66%), Gaps = 34/493 (7%) Strand=Plus/Minus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 ||||||||||||| ||| ||| |||| || || ||||||| ||||| ||||||||||| Sbjct 11000 TGGAGGTCCGAACAAACTGATGATGAAGAAGCAGCGGATGAGTTGTGGTTAGGGGTGAAA 10941 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAG 209 || | | ||| || |||||||||||| |||||| || ||| || || | Sbjct 10940 TGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGC---GCAACA-G 10885 Query 210 TATCAC----CATCG-GGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCA 264 | | || |||| |||||| ||||||||| || ||| | | | | ||||| Sbjct 10884 T-TGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCCGC-TAGAGCGGTACCA 10827 Query 265 AACCATTGCAAACTCCGAATGCGC---ATCAGTTT----TACCGCGGG------------ 305 || | |||||||| |||| | || | | || | ||| Sbjct 10826 AATCGAGGCAAACTCTGAATACTAGATATGACCTCCAAATAACAGGGGTCAAGGTCGGTC 10767 Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 ||||| ||| | | |||| | | | ||||||| || || ||||| | |||||| Sbjct 10766 AGTGACACGATGAGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCGGATCACCAGCTA 10707 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| ||| | | |||| Sbjct 10706 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGATAACCAGGAG 10649 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||| ||||| | || ||||||||| ||| |||||||| ||||| || Sbjct 10648 GTTTGCCTAGAAGAAGCCA-CCCTTGAAAGAGTGCATAATAGCTCACTGATCGAGCGCTC 10590 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATGA 545 |||| || || | ||| ||| |||| ||||||| ||||||| | | | Sbjct 10589 TTGCGTCGAAGATGA-AGGGGGCCAAGCGGTCTGCCGAAGCTGTGGGATGTAAAAAAGCA 10531 Query 546 TCGGTAGGGGAGC 558 ||||||||||||| Sbjct 10530 TCGGTAGGGGAGC 10518 >seq1603 Length=354005 Score = 75.2 bits (82), Expect = 4e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141 ||| ||| |||||| |||||||||| |||| | ||||| |||||||| ||||| ||| Sbjct 157632 ACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAG 157691 Query 142 GGGTGAAAGGC 152 ||||||||||| Sbjct 157692 GGGTGAAAGGC 157702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689549092352