Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2348 102 1e-19 seq2881 82.4 1e-13 >seq2348 Length=2239424 Score = 102 bits (112), Expect = 1e-19 Identities = 170/243 (70%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| ||| || || |||| |||| || ||| | ||| |||| Sbjct 1436974 GGTGGATACCTAGGCACTTAGAGATGAGGAAGTGCGTATTAATCGACGAAATGCTCCGGG 1437033 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | |||||| ||||| |||||| || || ||| | Sbjct 1437034 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAAT-------TTTCGAA 1437085 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | |||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 1437086 CTTC---TACTGAATCCATGGGCAGGCAAGAGACAACATGGCGAACTGAAACATCTTAGT 1437142 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| ||| |||||||||||| || Sbjct 1437143 AGCCAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCGGCAAGCGAAATGGGAGCAG 1437202 Query 249 CCT 251 ||| Sbjct 1437203 CCT 1437205 >seq2881 Length=687714 Score = 82.4 bits (90), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 5/120 (4%) Strand=Plus/Plus Query 136 ATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGC 194 ||||||||| ||| || | |||| || ||| ||| || |||||||||| |||||| || Sbjct 303989 ATGCTGAATCCATGGG-AGGCAAGAGAAAACTTGGCAAAGTGAAACATCTTAGTAGCAGC 304047 Query 195 ---AGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||| ||| | |||||||| | ||| ||| |||||||| || ||||| Sbjct 304048 TAGAGGAAAAGAAAGCAAAAGCGATTCCCATAATAGCGGCAAGCGAAATCTGAGCAGCCT 304107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918372328608