Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2362 618 1e-174 seq2283 565 8e-159 seq1432 444 2e-122 seq59 399 7e-109 seq871 259 2e-66 seq2593 154 5e-35 seq2548 140 1e-30 seq2404 89.7 2e-15 seq1847 86.0 2e-14 >seq2362 Length=213369 Score = 618 bits (684), Expect = 1e-174 Identities = 462/536 (86%), Gaps = 13/536 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||| |||||| |||| | ||||||||||||||||||| Sbjct 211638 CTTCTGTTCCACACGAGATTTATGTTCTGGTTGAGCTCATCTTAGGACACCTGCGTTATC 211697 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||| ||| || || |||||||| Sbjct 211698 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAAAATTTCCTCTGCCCGGATC 211757 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCAT 183 ||||| | ||| ||||||| | | || || || | || | ||||| ||| Sbjct 211758 GGCCCACAAAGCGGACCTTAGGTCTAAAAGGAGG--GGCATTGCCCCGCTTCCGACTCAC 211815 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| || | ||| ||||||||||||| ||||||| ||| |||||||| Sbjct 211816 GGAGTAAGTAAAATAATGTTAAAAGTAGTGGTATTTCTCTTGCGCTGAA---GCTCCCAC 211872 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC----AACAG 299 || | ||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 211873 TTTTCCTACACCTCTCAAGTCATTTCACAAAGTCAGACTAGAGTCAAGCTAGCTAAACAG 211932 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 211933 GGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT-GATA 211991 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 211992 GTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGTGCGTCACTAATTAGATGACG 212051 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| Sbjct 212052 AGGCATTTGGCTACCTTAAGAGAGTCGTAGTTACTCTCGCTGTTTACCCGCGCTTGGTTA 212111 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 212112 AATTTCTTCACTTTGACATTCAGAGCATTGGGCAGAAATCACATTGCGTTAACATC 212167 >seq2283 Length=253045 Score = 565 bits (626), Expect = 8e-159 Identities = 449/532 (84%), Gaps = 12/532 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||| ||||||| |||| | |||| ||||| |||||||| Sbjct 1776 CTTCTGTTCCACACGAGATTTATGTTCTCGTTGAGCTCATCTTAAGACACTTGCGTTATC 1717 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||| ||||| ||| ||||||||||||||||||| || || ||||||| Sbjct 1716 TTTTAACAGATGTGTCGCCCTAGCAAAACTCCCCACCTGACAATCTCCTCCGCCCGGATT 1657 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 |||| || ||| ||||||| | | || | || | || || |||| |||| Sbjct 1656 GGCCTGCAAAGCGGACCTTAGGTCTAAAAGGAAGGGCATTGCC--CCGCTTCCAACTCAT 1599 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || |||||||| |||| | | ||| || ||||||||||| |||||| |||||||| Sbjct 1598 AGAGTAAGTAAATTAACGTTCAAAGTAATGATATTTCACTTGTGCCGAA---GCTCCCAC 1542 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||| Sbjct 1541 TTATCCTACACCTCTCAAGTCATTTCCTAAAGT-GGACAAGAGTCAAGCTTAACAGGGTC 1483 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||||||||||||||||||||||||| || || |||| Sbjct 1482 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTTGCCGGAGAGTAC 1423 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1422 A--GGGACAATGGGAATCTCGTTAATCCATTCATGCGTGTCACTAATTAGATGACGAGGC 1365 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1364 ATTTAACTACCTTAAGAGAGTCAGAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 1305 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||| ||||||||||| ||||||||||||||||||| |||||| Sbjct 1304 TCTTCACTTTGACTTTCAGAGCACT-GGCAGAAATCACATTGCGTTAACATC 1254 >seq1432 Length=9756 Score = 444 bits (492), Expect = 2e-122 Identities = 386/477 (81%), Gaps = 43/477 (9%) Strand=Plus/Minus Query 62 TTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCC 121 |||| ||||||||||||||||||||||||||||||||||||||| |||||| || |||| Sbjct 7500 TTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGATAATGTCTTCCACCC 7441 Query 122 GGATCGGCCCGCGAAG--GACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGC 178 ||||||||| || ||| ||||||| | | || | || | || ||| ||||| Sbjct 7440 GGATCGGCCTGCAAAGCGGACCTTAGGTCTAAAAGGAGGGGCATTGCC--CCACTTCCGA 7383 Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCT 238 ||| || ||||||||| |||| ||| ||||||||||||||||||| || || ||| Sbjct 7382 CTCACGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCCCCAAA---GCT 7326 Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 7325 CCCACTTATCCTACACCTCTCAAGTCATTTCACATAGTCGGACTAGAGTCAAGCTCAACA 7266 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 7265 GGGTCTTCTTTCCCTGTTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 7206 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||| | ||| |||||||||||||| ||| |||| || | Sbjct 7205 AGTAGACAAGGATAGTGGGAATCTCGT---TCC------------CACTTAT-------C 7168 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 | ||| || || |||||||||||||||||||||| |||||||||| || Sbjct 7167 CATTCAT---GC-AC---------GTCATAGTTACTCCCGCCGTTTTCCCGCGCTTGATT 7121 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 7120 AAATTTCTTCACTTTGACATTCAGAGCATTGGGCAGAAATCACATTGCGTTAACATC 7064 >seq59 Length=614426 Score = 399 bits (442), Expect = 7e-109 Identities = 330/396 (83%), Gaps = 10/396 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| |||||||||||| | | || | ||||| ||||| ||||||| Sbjct 432660 CTTCTGTTCCACACGAGATTTCTGTTATTGTTAAGCTCATCTTAG-ACACCAGCGTTATC 432602 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||| | |||||||||||||||||||||||||||||| | |||||||| Sbjct 432601 -TTTAACAGATGTGTCACCCCAGCCAAACTCCCCACCTGACAATGTCCTACGCCCGGATC 432543 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCAT 183 ||||||| ||| ||||||| | | || || || | || | ||||| ||| Sbjct 432542 GGCCCGCAAAGCAGACCTTAGGTCTAAAAGGAGG--GGCATTGCCCCGCTTCCGACTCAC 432485 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| ||||||||||||||||||||||||| ||||||| Sbjct 432484 GGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCTCCCAT 432428 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 432427 TTATCCTACACCTCTAAAGTCATTTCACAAAGTTGGACTAGAGTCAAGCTCAACAGGGTC 432368 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||| ||||| ||||||||| || ||||||||||||||||||| |||||||| Sbjct 432367 TTCTTTCCCCGCCGATTCTGCCAAGCCCATTTCCTTGGCTGTGGTTTCGCTGGATAGTAG 432308 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC 399 | |||||||||||||| ||||||||||||||||||| Sbjct 432307 ACAGGGACAGTGGGAAACTCGTTAATCCATTCATGC 432272 >seq871 Length=26230 Score = 259 bits (286), Expect = 2e-66 Identities = 250/316 (79%), Gaps = 9/316 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1475 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 1534 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||| ||||| ||| ||||||||||||||| |||||||||| || |||||||| Sbjct 1535 TTTTAACAAATGTGTTGCCTTAGCCAAACTCCCCACTTGACAATGTCCTCCGCCCGGATC 1594 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 ||||||| ||| ||||||| | | || | || | || || ||||| ||| Sbjct 1595 GGCCCGCAAAGCAGACCTTAGGTCTAAAAGGAAGGGCATTGCC--CCGCTTCCGACTCAC 1652 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 | |||||||| || | ||| ||||||||||||||||||||||||| |||| | Sbjct 1653 GAAGTAAGTAAATAA-CTTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCTCTGAA 1708 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||| |||||||||||||||||| || || ||||||||||||||||||||||||| Sbjct 1709 TTATCCTAAACCTCTCAAGTCATTTCAAAATATCAGACTAGAGTCAAGCTCAACAGGGTC 1768 Query 304 TTCTTTCCCCGCTGAT 319 ||||||||| |||||| Sbjct 1769 TTCTTTCCCTGCTGAT 1784 >seq2593 Length=777527 Score = 154 bits (170), Expect = 5e-35 Identities = 163/210 (78%), Gaps = 11/210 (5%) Strand=Plus/Plus Query 315 CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGT 374 ||| ||| | ||||| ||| |||||||| |||||| | ||||||||| | || Sbjct 451616 CTGTTTCTACTAAGCCTGTTTCCTTGGCTACGGTTTCACCGGATAGTAGACA---AC--- 451669 Query 375 GGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACC 434 || |||| |||||||||||||||| || ||| | ||||| |||||||| ||||| |||| Sbjct 451670 GGAAATCCCGTTAATCCATTCATG-GCATCATTTATTAGGTGACGAGGAATTTGCTTACC 451728 Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||| |||||| ||| |||||||||| | |||| |||||||||| |||||| Sbjct 451729 TTAAGAGAGATATAGTTTCTC---TCGTTTACCCGTGTTTGGCTGAATTTCTTTACTTTG 451785 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATT 524 | ||| ||||| ||| || |||||| || Sbjct 451786 AAATTTGGAGCAATGGATAG-AATCACGTT 451814 >seq2548 Length=803341 Score = 140 bits (154), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 609354 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 609295 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| | ||||| || ||||||||||| || ||||||| |||||| | ||||||| Sbjct 609294 ACTTAAAAAATGTGTCGTCCCAGCCAAACACCTCACCTGAAAATGTCCTTCGTCCGGATC 609235 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAA-AATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 ||||||| ||| ||||||| | | || | |||| || || ||||| ||| Sbjct 609234 GGCCCGCAAAGAAGACCTTAGGTCTAAAAGGAGGGTCATTG--CCCCGCTTCCGAATCAC 609177 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTC 220 || ||||||||| || | ||| ||||||||||||| Sbjct 609176 GGAGTAAGTAAAATAAAGTTAAAAGTAGTGGTATTTC 609140 >seq2404 Length=885034 Score = 89.7 bits (98), Expect = 2e-15 Identities = 71/85 (84%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATT 248 |||||||| ||| ||| ||| |||||||||||||| |||||| |||||||||| Sbjct 34814 AAGTAAAATAACATTAAAAGTAAAGGTATTTCACTTGCATCGAAAC---TCCCACTTATA 34870 Query 249 CTACACCTCTCAAGTCATTTCACAA 273 |||||| |||||||||||||||||| Sbjct 34871 CTACACATCTCAAGTCATTTCACAA 34895 >seq1847 Length=329982 Score = 86.0 bits (94), Expect = 2e-14 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATT 248 |||||||| ||| ||| ||| ||||||||||||||||||||| ||||||||||| Sbjct 213186 AAGTAAAATAACATTAAAAGTAAAGGTATTTCACTTGCGCCGAAA---CTCCCACTTATA 213242 Query 249 CTACACCTCTCAAGTCAT 266 | |||||||||||||||| Sbjct 213243 CAACACCTCTCAAGTCAT 213260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635150731424