Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq114 179 1e-42 seq2737 141 3e-31 seq118 132 2e-28 seq1113 93.3 1e-16 >seq114 Length=1421314 Score = 179 bits (198), Expect = 1e-42 Identities = 187/244 (77%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||| ||||| | Sbjct 103898 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTAAAGGTGCA 103957 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 103958 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 104017 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| ||||||||||| |||| ||||| | Sbjct 104018 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCATGTCGCTACTTATGC 104077 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| |||| ||||||||||||||| Sbjct 104078 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCAGTTTACTGGGGCTTC 104137 Query 480 AATT 483 ||| Sbjct 104138 CATT 104141 >seq2737 Length=743495 Score = 141 bits (156), Expect = 3e-31 Identities = 154/203 (76%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 282 AAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTAC 340 |||||||||| ||||| | ||||||||| |||| | | | | ||||||| || Sbjct 44923 AAGCTATAGTAAAGGTGCACGGGGTCTTACCGTCTAGGTGTTGGTACTCCGCATCTTCAC 44864 Query 341 TCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCG 400 | | |||||||||| || | || |||||||| ||| ||||||||| |||||| Sbjct 44863 GGAGAATTCAATTTCACCAGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCA 44804 Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCAC 460 || |||||| ||||| | |||||||||||||||||||||| | ||| |||||| | Sbjct 44803 TGTAGGTCGCTACTTATGCAACAAGGAATTTCGCTACCTTAGAACAATTAGAGTTACTGC 44744 Query 461 CGCCGTTTACTGGGGCTTCAATT 483 ||||||||||||||||||| ||| Sbjct 44743 CGCCGTTTACTGGGGCTTCCATT 44721 >seq118 Length=66824 Score = 132 bits (146), Expect = 2e-28 Identities = 224/325 (69%), Gaps = 17/325 (5%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 |||||||||||||||| || | | || || | | |||||||||| |||| | Sbjct 52276 CTCCCACCTATCCTACTCATTCGATCAAGGTTGTCACTGCAAAGCTATAGTATAGGTGCA 52335 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | || ||||||| || | | |||||||| || Sbjct 52336 CGGGGTCTTACCGTCTAGCCGTTGGTAATCCGCATCTTCACGGAGAATTCAATTTCAGCG 52395 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| || |||| |||| |||||| | |||||| ||||| | Sbjct 52396 GGTCCATGTCGGAGACAGCGGGTCAGTCTTTACACCATTCTTATAGGTCGCTACTTATGC 52455 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 | ||||||||| ||||||||| || ||| |||||| |||||||||||| ||||||| Sbjct 52456 AAAAAGGAATTTTGCTACCTTAAGACAATTAGAGTTACTGCCGCCGTTTACTAGGGCTTC 52515 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 |||| || | | | ||| | |||| |||||||||||||| Sbjct 52516 CATTAAAAGCTT---ATAACACTT-------------TTCCTTCCGACCTTCCAGCACCG 52559 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||| ||||| | ||||| ||| Sbjct 52560 GGCAGGTGTCAGACTCTATACATCG 52584 >seq1113 Length=2548689 Score = 93.3 bits (102), Expect = 1e-16 Identities = 144/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 382074 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 382133 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 382134 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGACTA-CGCCCCAT 382192 Query 121 TTAAACTACCCACCAGGCACTGTCCC---CAACCCAGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| | | || || || |||||||||| || Sbjct 382193 AGAAACTGTCTACCTGAGACTGTCCCTTGGACCGTAGGTCCTGACACAAGGTTAGAATTC 382252 Query 178 CACTACGGTCAGAGTGGTATTTCA 201 | | |||||||||||| ||| Sbjct 382253 TAGCTCTTTCAGAGTGGTATCTCA 382276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702348706688