Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2688 102 1e-19 seq2548 102 1e-19 seq59 93.3 7e-17 seq2362 84.2 4e-14 seq2123 84.2 4e-14 seq1432 73.4 6e-11 >seq2688 Length=117909 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| | | | || |||| Sbjct 55267 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTAGTTAAAAAGCCAGT 55210 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||| ||||||| |||| Sbjct 55209 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTTAGAATCCGGGCCA 55150 Query 121 GAA 123 ||| Sbjct 55149 GAA 55147 >seq2548 Length=803341 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 609675 GTACAAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 609732 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||| ||||||| ||||||||||||||||||||||| |||| Sbjct 609733 GGCGCGAAGCTACCGTGTGCTAGATTATGATTGAACGCCTCTAAGTCAGAATCCGGGCCA 609792 Query 121 GAA 123 ||| Sbjct 609793 GAA 609795 >seq59 Length=614426 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||||| || |||| | | ||||| | | || ||| || || | Sbjct 432983 GTACAAGAGGAACCGTTGA-TTCACAC-AGTTGGTCATCATGCTTGGTTGAAAAGTCATT 433040 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||||||||||| |||| Sbjct 433041 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 433100 Query 121 GAA 123 ||| Sbjct 433101 GAA 433103 >seq2362 Length=213369 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| ||||| || |||| | | ||||| | || || ||| || |||| Sbjct 211315 GTACGAGAGTAACCGTTGA-TTCACAC-ATTTGGTCATCACGCTTGGTTGAAAAGCCAGT 211258 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 || ||||||||| | |||||||||||| || ||||||||||||||||||||| |||| Sbjct 211257 AGCGTGAAGCTACCGTGTGCTGGATTATGACTAAACGCCTCTAAGTCAGAATCCGGGCCA 211198 Query 121 GAA 123 || Sbjct 211197 AAA 211195 >seq2123 Length=1169 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| |||||| | | ||||| | ||| || ||| || |||| Sbjct 291 GTAAGAGAGGAACCGTT-AATTCACAC-AGTTGGTCATCGCGCTTGGTTGAAAAGCCAGT 348 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||| ||||| | |||| ||||| |||||||||||||||||||||||| |||| Sbjct 349 GGCGCGAAACTACCGTGTGCTAAGTTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 408 Query 121 GAA 123 || Sbjct 409 AAA 411 >seq1432 Length=9756 Score = 73.4 bits (80), Expect = 6e-11 Identities = 68/85 (80%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 29 AATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTAT 88 ||||||| | ||| || ||| | | ||||| ||||||||| | | ||||||||||| Sbjct 7866 AATTGGTCATCGCGCTTGGTTGAAC-GCCAGTGGTGCGAAGCTATCGTGTGCTGGATTAT 7924 Query 89 GGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||||||||||||| Sbjct 7925 GATTGAACGCCTCTAAGTCAGAATC 7949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819176088832