Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq59 551 2e-154 seq2348 237 5e-60 >seq59 Length=614426 Score = 551 bits (610), Expect = 2e-154 Identities = 435/514 (85%), Gaps = 12/514 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| ||| || ||| |||||||||||||||||| Sbjct 437349 GTACTCATTCCAATTACCAGACTCAAA-GAGTCCGATATTGTTATTTATTGTCACTACCT 437291 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATG---TGGTAGCC 117 ||||||||| |||||||||||||||||||||| |||||||| ||||||| |||||||| Sbjct 437290 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTACTGCCTTCATTGGATGATGTGGTAGCC 437231 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 | |||||| | |||||||||| ||||||| | |||||| |||| |||||| |||||| Sbjct 437230 GCTTCTCAAGATCCCTCTCCGAAATCGAAACGTAATTCTCCGTCACCCGTCACCACCATG 437171 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| Sbjct 437170 GTAGGCCACTATCCTACCATCGAAAGTTCATAGGGCAGAAATTTGAATGATGCGTCGCCA 437111 Query 238 GCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----G 292 || | |||||| |||||||||| |||||| |||||||| ||| | | | || Sbjct 437110 GCGCAAAGGCCGTGCGATTCGTCGAGTTATCATGAATCATCAAAGCAACGGGCAGAGCTC 437051 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTAT 351 |||||| ||||||||||||||| || ||||||| ||||||||||||| | || |||| Sbjct 437050 GCGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTACACGTAT 436991 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTG 411 ||||||||||||||| |||||||||| |||| |||||| |||||| |||| ||||||| Sbjct 436990 TAGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGGTACCATCAAACAAACTATAACTG 436932 Query 412 ATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGC 470 |||||||||||||||||||||||||| | || | | | | ||||||| ||||||||||| Sbjct 436931 ATTTAATGAGCCATTCGCAGTTTCACAATCTAAACTAGTTCATACTTACACATGCATGGC 436872 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||| |||| Sbjct 436871 TTAATCTTTGAGACAAGCATATGACTACTAGCAG 436838 >seq2348 Length=2239424 Score = 237 bits (262), Expect = 5e-60 Identities = 178/205 (87%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || ||||||| ||||||||||||| | || || |||||||||| Sbjct 913166 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCGCGTGTTAGCTCTAG 913225 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 ||| || |||||||||| |||| | ||||| |||||| |||| |||| ||||||||||| Sbjct 913226 AATCACTACGGTTATCCGAGTAGCA-GGTACCATCAAACAAACTATAAATGATTTAATGA 913284 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 | ||||||||||||||| |||| ||| || ||||||| |||||||||||||||||||| Sbjct 913285 GACATTCGCAGTTTCACAGTATGAATTAGTTCATACTTACACATGCATGGCTTAATCTTT 913344 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| ||||| Sbjct 913345 GAGACAAGCATATGACTACAGGCAG 913369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510354491648