Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2659 138 9e-28 seq558 86.0 5e-12 >seq2659 Length=772501 Score = 138 bits (152), Expect = 9e-28 Identities = 551/848 (65%), Gaps = 27/848 (3%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || |||||||| |||||||| | || || |||||| | || |||| Sbjct 20414 ATGTACAAAAAAGCTGAAGCTTCGTTCTGGACTGCCGAAGAAGTCGATCTTTCACAAGAT 20473 Query 61156 ATGAATGACTGGG--AGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 | | |||||| | ||| ||| | || ||||| |||||||| | || | | Sbjct 20474 GTTCGTCACTGGGAAACCGTCTTAACCTCCGACGAACAGCATTTCATCACCCACATCCTT 20533 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || ||||| || || |||||| | | | | ||| | | Sbjct 20534 GCCTTCTTCGCCGCATCTGACGGCATAGTTCTCGAGAATCTCGCCGGAAGATTCATGAAA 20593 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 ||||| || || | || || || |||||| |||||||| || ||||| || || | Sbjct 20594 GAGGTCCAGGTTGCTGAAGCTCGCGCTTTCTATGGCTTCCAAATCGCCATTGAAAACATT 20653 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 ||||| || |||||| | |||| | || || || |||| || | | | | || Sbjct 20654 CACTCTGAAATGTACTCTCTTCTTTTAGAAACTTATATCAAAGA---TTCTAACCTTAAA 20710 Query 61393 --CGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC- 61448 | || | || ||| || || || || || || ||| ||| || |||||||| Sbjct 20711 ACCCATCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCTGATTGGGCT 20770 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC-GG 61507 |||| |||||| || || | |||||| ||| | || | || ||||| | Sbjct 20771 CTTC-GTTGGATTGATGGTGCA---GAATCATTTGCTGAGAGGTTAATTGCTTTTGCTTG 20826 Query 61508 TGGTCGAGGG-TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGT 61566 || | |||| | | || || | ||| |||| | | ||||| ||| | || || ||| Sbjct 20827 TGTTGAAGGGATTTTCTTCTCCG-GGAGTTTTTG-CTCCATCTTCTGGCTTAAAAAGCGT 20884 Query 61567 GGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCAT 61626 || | ||||| ||| | |||||| || ||| ||||||| || ||||| || | ||| Sbjct 20885 GGGTTAATGCCGGGTTTAACCTTCTCGAACGAGCTGATATCGCGAGACGAAGGGCTTCAT 20944 Query 61627 TGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGT 61686 ||||| |||||| | || | | || ||| ||| ||| | | | |||| Sbjct 20945 TGTGACTTTGCTTGTCTGTTGTACA---GCTTACTGAAGAAGAAGCTGAGTGTGGAGAAG 21001 Query 61687 GTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTG 61746 || | ||| || || || || |||||| | || || | ||||| || | Sbjct 21002 GTTCAGGGGATAGTGAAGGATGCAGTCGATATCGAGCGAGAGTTCGTAACTGATGCGCTT 21061 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 || || || | || ||||| |||| || ||| ||||| ||||| |||||||| Sbjct 21062 CCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGTCAGTACATTGAGTTTGTTGCA 21121 Query 61807 GACCGTCTGTTGG-TCGATTTGGGTATGAAGCGGATCTA--TAATACGAAAAACCCATTT 61863 ||| | ||||||| | | ||||| ||| || | || | | | | |||||||| Sbjct 21122 GACAGACTGTTGGCTGCGCTCGGGTACGAAAAGG-TTTACGGAGTTC--AGAACCCATTC 21178 Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGC 61923 |||| ||||| |||| || || | || ||||| ||||| || ||||| | || || Sbjct 21179 GATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGG 21238 Query 61924 GACTATCA 61931 || ||||| Sbjct 21239 GAGTATCA 21246 >seq558 Length=1338247 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||| ||| |||| |||||| || ||||| | |||||||||||| || Sbjct 390172 ATCCACAGTGAACTTGATAGCATCAGCAGCTGCTCGTGTCCTTAAATAGTACATGCCTGT 390231 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| | || | ||| |||| || |||| || | ||| ||| | |||| || | Sbjct 390232 CTTCAAACCCTTAGACCATGCATGAAAGTGCAGAGAAGTTAACTTTCCGAAATTGGGTTG 390291 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 | || || ||||| | ||||| ||||| ||| ||| |||||||| ||||||| Sbjct 390292 TGTCATGTGAATATTTAGGCTTTGACTTTGATCAATGAAACATCCACGATCAACAGCCAT 390351 Query 65257 GTCAA 65261 |||| Sbjct 390352 ATCAA 390356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397553400930320