Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1325 556 1e-153 seq1658 524 8e-144 seq2002 504 8e-138 seq936 86.0 7e-12 seq1113 82.4 8e-11 >seq1325 Length=385796 Score = 556 bits (616), Expect = 1e-153 Identities = 708/968 (73%), Gaps = 5/968 (1%) Strand=Plus/Plus Query 159824 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCA 159883 || || ||| | || ||| | || ||||| || || ||||||||||||| | ||| | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 159884 GCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCAT 159942 |||||| |||| || || | |||||||| |||||||| | || || || ||||| || Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 159943 CCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGT 160002 ||||||| || | || || || | ||||| ||||| || || || ||||| || | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 160003 TCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGA 160062 ||| |||| || || || | ||||| ||||| || |||||||| || ||| | || Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 160063 CGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCAT 160122 |||||| | || ||||| ||||||| |||| | || | |||| | | || | Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGT 7304 Query 160123 CT-ATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGA 160181 ||| ||||||||||||||||||||||| || |||||| |||||||| || |||| Sbjct 7305 AGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGA 7363 Query 160182 TCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCT 160241 | ||||||||| || ||||| || || || ||| ||| ||| ||| | |||||| Sbjct 7364 TTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAA 7423 Query 160242 TCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 160301 | ||||| || || || |||| ||||||||| || |||||| ||||||| |||| || Sbjct 7424 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTA 7483 Query 160302 TGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG 160361 || |||||||||| || || ||||| |||||||||||||| || | |||| | ||||| | Sbjct 7484 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAG 7543 Query 160362 CTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTC 160421 |||| || |||| || ||||| | |||||||||||| || |||| ||||||||| Sbjct 7544 CTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 7603 Query 160422 TCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGG 160481 | |||| || || ||| ||| ||| || || | ||||||| ||| | ||||||| Sbjct 7604 TGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGG 7663 Query 160482 AAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATG 160541 |||| ||||| || || || || || ||||| || ||||| || |||||||| ||||||| Sbjct 7664 AAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATG 7723 Query 160542 CATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAA 160601 | || |||||||| || ||| | | ||||||| | |||||||||||||| || || | Sbjct 7724 CTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTA 7782 Query 160602 TCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCA 160661 | ||||| ||||| | ||| || ||| ||||| ||||| | ||||||||||| |||| Sbjct 7783 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCA 7842 Query 160662 ACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACC 160721 |||| || | | || | ||||| | || | | |||||||| || | |||||| Sbjct 7843 ACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACC 7902 Query 160722 GCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACC 160781 ||| | || |||||||| ||||| || ||||| ||||| |||||||||| |||| Sbjct 7903 ATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACC 7962 Query 160782 TTGCTGCT 160789 | || ||| Sbjct 7963 TAGCCGCT 7970 >seq1658 Length=355568 Score = 524 bits (580), Expect = 8e-144 Identities = 716/991 (72%), Gaps = 18/991 (2%) Strand=Plus/Minus Query 159812 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCA 159871 ||| ||||| || | ||||| || ||| | || ||||| || || |||||||||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 159872 ACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGA 159930 || | ||| | |||||| |||| || || | |||||||| |||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 159931 CATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTC 159990 || ||||| || |||||||| || | || || || | ||||| || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 159991 TGGTGCAGTTGTTCC--CTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAA 160048 ||| | || |||| || || || | | || | ||||| ||||| || || ||| Sbjct 187736 GGGTACCATTATTCCTACTTTTGCA--GTTGTAGGGTTGCACTTTTATCCAATATGAGAA 187679 Query 160049 GCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCAC 160108 || || | | | || |||||| | || ||||||||||||| |||| | || | ||| Sbjct 187678 GCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACAC 187619 Query 160109 TTCCTGATCGGCATCT-ATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGG 160167 || | | || | ||| ||||||||||||||||||||||| || |||||| || Sbjct 187618 TTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGG 187560 Query 160168 TATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATT 160227 |||||| || ||||| ||||||||| | |||| | || || ||| ||||||| || Sbjct 187559 TATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTT 187500 Query 160228 CCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGG 160287 | | ||||||| | ||||| || || | |||| ||||||||| | |||||||| Sbjct 187499 CTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGG 187440 Query 160288 TACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCA 160347 |||||| |||| |||| |||||||| | || || ||||| |||||||||||||| || || Sbjct 187439 TACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCA 187380 Query 160348 CATGCTCGGTGTTGCTGGGG--------TATTCGGTGGATCTCTGTTCTC-TGCTATGCA 160398 |||| | ||||| ||||| | ||||||| | ||||| |||| ||||||||| Sbjct 187379 CATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCA 187321 Query 160399 TGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTA 160458 ||| || |||| | ||||||| | | || || || ||||||| ||| || || | Sbjct 187320 TGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGA 187261 Query 160459 TGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTT 160518 ||||||| ||||| ||||||||||| ||||| || || || || || ||||| || || Sbjct 187260 GGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTT 187201 Query 160519 CGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCT 160578 || || |||||||| |||||| | || ||| |||| || ||| | ||||||||| | Sbjct 187200 CGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTT 187141 Query 160579 CGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATT 160638 |||||||||||||| || || || ||||| | ||| | ||| || ||| ||||| || Sbjct 187140 AGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTT 187081 Query 160639 CAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAA 160698 ||| | ||||||||||| |||||||| || | | || | ||||| | || | || Sbjct 187080 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 187021 Query 160699 CACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAA 160758 |||||||| || | ||||||| ||| || || |||||||| ||||| || ||||| Sbjct 187020 TACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 186961 Query 160759 CGCTCACAACTTCCCTCTCGACCTTGCTGCT 160789 ||||| ||||||||||| ||||| || ||| Sbjct 186960 TGCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 >seq2002 Length=1023113 Score = 504 bits (558), Expect = 8e-138 Identities = 718/996 (72%), Gaps = 12/996 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||||||||||| || |||||||| || | || |||| ||||||| | || Sbjct 167458 GACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCTTTCGTG-TGCTTATTTCGCC 167516 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| |||| || || || || | || ||||||||||||||| | || Sbjct 167517 TTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 167576 Query 161665 AGTTCCTATCTTGAGGGT-GCAAATTTTCTTA-CAGCGGCAGTTAGCACTCCAGCTGACG 161722 ||||| ||| | || ||| |||| ||||||| | ||| ||||| ||||| ||| | Sbjct 167577 AGTTCTTATTTGGAAGGTTGCAA--TTTCTTAACCGCGACAGTTTCTACTCCTGCTAATA 167634 Query 161723 CTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAG 161780 | | | || ||| || || || || |||||||| || || ||||| || ||| || | Sbjct 167635 GTTTAGCCCACTCT-TTATTGTTACTGTGGGGTCCCGAAGCACAAGGAGACTTTACTC-G 167692 Query 161781 GTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGAT 161840 ||| ||| | || || || |||| |||||| || || || || |||||||| || || Sbjct 167693 TTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTTAT 167752 Query 161841 TGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATG 161899 || || ||| | ||||| || || |||||||| || || | | || ||||| |||| Sbjct 167753 AGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAAT-TGCGCCCTTATAATG 167811 Query 161900 CTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGG 161959 | || || || |||||||| |||||||||||||| || || || || ||||| || | Sbjct 167812 CAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAG 167871 Query 161960 GACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTAC 162019 | ||||| |||||||| || || ||||| | || ||||| || | ||| | | Sbjct 167872 GTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTATATTTCGATTCATTC 167931 Query 162020 TTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAG 162079 | || | ||||| || || |||||||| || ||||| || || |||||||| || || | Sbjct 167932 TCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATATGATGGGAGTTGCCG 167991 Query 162080 GTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCT 162139 || | ||||| | ||| | || | |||||||| || | || || ||||| | | | Sbjct 167992 GTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGTAGAAAATAATTTAT 168051 Query 162140 ACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGA 162199 |||| ||||| |||||||| ||| ||||||| || | || |||| || || | Sbjct 168052 TTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCCGAAGAAA 168111 Query 162200 CTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTA 162259 |||| || ||||| || || ||||| || ||||| || || || || |||||||| | Sbjct 168112 CTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTCCA 168171 Query 162260 ATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTT 162319 |||| ||||||| |||||||||||| | || || || || | ||| | |||| ||| Sbjct 168172 ATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTG 168231 Query 162320 CTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGA 162379 || | || | | || | ||| | || || ||||| || ||||| | || ||||| | Sbjct 168232 CTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGAAA 168291 Query 162380 TTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATG 162439 | ||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| || | Sbjct 168292 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACG 168351 Query 162440 AAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTG 162499 ||||| ||||||| ||| |||| | ||||| || ||||| ||| || ||||||||| Sbjct 168352 AAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 168411 Query 162500 AGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 |||| ||||| || | || ||||| || | ||||| Sbjct 168412 AGGAGGTTCTACCCCGTGGAAACGCTCT-TTAATGG 168446 >seq936 Length=443095 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 160959 GGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTG 161018 ||||||| || ||| | || |||||||| || | ||| |||| || ||||| || Sbjct 203463 GGATGATGTGTACGTCTTGGATGCTGCTGAAGAGGTAGGGATTGATTTGCCTTACTCGTG 203522 Query 161019 TCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATC 161078 | | ||||| | ||||| | || || |||| | || || ||||||| | || || || Sbjct 203523 TAGGGCTGGCTCGTGCTCCTCATGCGCCGGTATGCTTAAGTCTGGTACTCTCGACCAGTC 203582 Query 161079 TGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138 ||||||||| ||| | |||||||| || | | | |||| || || || || | ||| Sbjct 203583 TGATCAATCCTTCTTAGATGATGACCAGATAGCTGCTGGATGGGTTCTTACTTGTGCTGC 203642 Query 161139 TTATCCCACTTCTGATGTAACTATT 161163 ||| || | |||||| || ||| Sbjct 203643 TTACCCTGTTAGTGATGTTACCATT 203667 >seq1113 Length=2548689 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 ||||||||||||||||||||||| || |||||| |||||||| || || || ||| Sbjct 1750631 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGAATTGTTGTC 1750572 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGT 160224 ||||| || ||||| || || | ||| ||||||| Sbjct 1750571 GCATATTCAGCTCCGGTTGCAGTGGCTACTGCTGT 1750537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551355233801400