Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07-
18] 3,013 sequences; 337,010,935 total letters
Query= NC_031906.1
Length=198190
Score E
Sequences producing significant alignments: (Bits) Value
seq1325 470 2e-127
seq2002 452 5e-122
seq1658 446 2e-120
>seq1325
Length=385796
Score = 470 bits (520), Expect = 2e-127
Identities = 692/970 (71%), Gaps = 11/970 (1%)
Strand=Plus/Plus
Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-C 188930
||||| ||| |||| ||| | || ||||| ||||| |||||||||| || ||| | | |
Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAAC-CTTATTGAC 7064
Query 188931 TGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCA 188989
|||||| |||| || || | ||||| | ||||| || | ||||| |||||||| |
Sbjct 7065 TGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTA 7123
Query 188990 TCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 189049
| || |||| || | || || || | || |||||||| || || || ||||| ||
Sbjct 7124 TTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTA 7183
Query 189050 TCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCG 189109
| ||| | || || || || | ||||| || || || |||||||| || || | |
Sbjct 7184 TTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTG 7243
Query 189110 ATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCA 189169
|||||||| | |||||||| ||||||| |||| | || | |||| | | ||
Sbjct 7244 ATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGG-- 7301
Query 189170 TCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTT 189226
| || || | | |||||||||||||||||||| || |||||| |||||||| ||||
Sbjct 7302 TGTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTT 7360
Query 189227 GGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATC 189286
|||| |||| || || || || |||||||| || | | || || || |||| |
Sbjct 7361 GGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACC 7420
Query 189287 CTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACT 189346
|||||||||| || ||||| | ||||| | || ||| | | || |||||||
Sbjct 7421 TAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACT 7480
Query 189347 ACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAG 189406
||| |||| ||||| || |||||||||||||| ||||| || || | |||| | || |
Sbjct 7481 TTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTG 7540
Query 189407 TCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTT 189466
| || ||||| |||| || || || | || ||||||||||| | || || |||
Sbjct 7541 TAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTA 7600
Query 189467 CACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAG 189526
|| | | |||||||| ||| || || || | ||||||| || | ||||
Sbjct 7601 GTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAG 7660
Query 189527 AAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAAT 189586
| |||||||| || || || || ||||||||||| |||||||| || | ||||| ||||
Sbjct 7661 AGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAAT 7720
Query 189587 ATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGG 189646
|||| ||||||||||| ||||| || ||||||| | ||||| ||||| || || |
Sbjct 7721 ATGCTAGTTTCAACAACTCTCGTTC-TTTACCTTCTTCTTAGCTGCTTGGCCTGTAGTAG 7779
Query 189647 GTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACT 189706
|||| |||||||| || | || | || || ||||| |||||| | ||||| ||||| |
Sbjct 7780 GTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATT 7839
Query 189707 TCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCA 189766
|||| ||||| | ||||| ||||||||||||| | | || ||||| || | | |
Sbjct 7840 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTA 7899
Query 189767 ACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTG 189826
||| |||| ||||||||||||| |||||||| ||||| ||||| |||||||||| |
Sbjct 7900 ACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAG 7959
Query 189827 ATCTGGCAGC 189836
| || || ||
Sbjct 7960 ACCTAGCCGC 7969
>seq2002
Length=1023113
Score = 452 bits (500), Expect = 5e-122
Identities = 706/1003 (70%), Gaps = 5/1003 (0%)
Strand=Plus/Plus
Query 189999 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 190058
||||||||| | | || || || || ||||| ||||||||||| || | || |||
Sbjct 167440 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCTTT 167499
Query 190059 CCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGG 190118
| ||||||| |||| | || || ||| |||| || || || |||| || |||
Sbjct 167500 CGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 167558
Query 190119 TACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGCGGCTGTG 190178
|| ||||| ||| | || ||| ||| | || ||| ||||| | || ||| | ||
Sbjct 167559 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAGTT 167618
Query 190179 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAA 190238
|| || |||||| || | | | || ||| | | |||| |||||||| ||| | |||
Sbjct 167619 TCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAA 167678
Query 190239 GGCGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 190297
|| || ||| || | ||| ||| | || || || ||| ||||||| || || || ||
Sbjct 167679 GGAGACTTTACTC-GTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGG 167737
Query 190298 GGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTA 190356
|||||||| || || || || ||| | ||||| || || || || || || || |
Sbjct 167738 TGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAAT- 167796
Query 190357 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC 190416
| || ||||| ||||| || || || |||||||| || |||||||||||| || || |
Sbjct 167797 TGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 167856
Query 190417 TCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGA 190476
| || || || || ||||| || |||||||||| || || || ||| | ||||| |
Sbjct 167857 TAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTA 167916
Query 190477 TCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACA 190536
| || || ||| | ||||| || || || || ||||| ||||| ||||| || || || |
Sbjct 167917 TATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATA 167976
Query 190537 TGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTG 190596
||||||| ||||| ||| | |||| | || ||||| | || || ||||| | || |
Sbjct 167977 TGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCG 168036
Query 190597 TAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTA 190656
|||| |||| ||| | |||||| ||||| ||||| || || || || || | |
Sbjct 168037 TAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAA 168096
Query 190657 CACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTG 190716
| |||| ||||| || ||||| |||||||| || ||||| || ||||| ||||| ||||
Sbjct 168097 CCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTG 168156
Query 190717 GTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGG 190776
| ||||| || ||||| | ||||| |||||||||||| | ||||| || || | |
Sbjct 168157 GCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 168216
Query 190777 GTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 190836
|| | |||| | | | || | | ||| | ||| | ||||| ||||| |||||||
Sbjct 168217 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACT 168276
Query 190837 TTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAA 190896
| | ||||| || ||| | ||||| |||||||| || || || ||||| ||||| ||||
Sbjct 168277 TCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAA 168336
Query 190897 ATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGA 190956
|||| || || || |||||| ||||| | ||| |||| || ||||| || ||||| |
Sbjct 168337 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 168396
Query 190957 ATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999
| || |||| || || || || | || | || ||||||||
Sbjct 168397 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439
>seq1658
Length=355568
Score = 446 bits (494), Expect = 2e-120
Identities = 695/982 (71%), Gaps = 26/982 (3%)
Strand=Plus/Minus
Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-C 188930
||| | |||||||| ||| | || ||||| ||||| ||||||||||||| ||| | | |
Sbjct 187903 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGAC 187845
Query 188931 TGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCA 188989
|||||| |||| || || | ||||| | ||||| || | |||| |||||||| |
Sbjct 187844 TGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTA 187786
Query 188990 TCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 189049
| || ||||| || | || || || | || ||||| || || || || ||| | ||
Sbjct 187785 TTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTA 187726
Query 189050 TCCCTTCATCCAACGCAATTG---GTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCAC 189106
| ||| | | ||| ||| | | ||||| || || || || ||||| || |
Sbjct 187725 TTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGG 187669
Query 189107 TCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCG 189166
| ||||||||| | |||||||||||||||| |||| | || | ||||| | | |
Sbjct 187668 TTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTG 187609
Query 189167 GCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTC 189223
| | || || | | |||||||||||||||||||| || |||||| |||||||| |
Sbjct 187608 G--TGTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCC 187552
Query 189224 CTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCT 189283
||||||| |||| || | || | ||||||| || | || || || || |||
Sbjct 187551 CTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCT 187492
Query 189284 ATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCA 189343
| || |||||||||| || | ||| | ||||| | | ||| ||| || ||||
Sbjct 187491 ACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCA 187432
Query 189344 ACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGG 189403
||| ||| |||| ||| | || |||||||||||||| ||||| || || |||||| | |
Sbjct 187431 ACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAG 187372
Query 189404 GAGTCGCAGGTGTC--------TTCGGTGGTTCACTGTTCTCC-GCAATGCATGGTTCAC 189454
| || || |||| | ||||| | || || |||| || |||||||||||
Sbjct 187371 GTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCATGGTTCCT 187313
Query 189455 TCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACA 189514
| || | ||| || || | |||||||| |||| || || || | |||||||
Sbjct 187312 TGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACA 187253
Query 189515 AGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTC 189574
|| || ||||| |||||||| || || || || ||||||||||| ||||||| ||
Sbjct 187252 GATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGAT 187193
Query 189575 TTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCT 189634
| ||||| |||||| | |||||| |||| ||||| | ||||||||| | ||||| |
Sbjct 187192 TGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTT 187133
Query 189635 GGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCA 189694
|||| || || ||||| ||||||| || | || | || || ||||| |||||| | |
Sbjct 187132 GGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAA 187073
Query 189695 ATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGG 189754
|||| ||||| ||||| ||||| | ||||| ||||||||||||| | || || ||||
Sbjct 187072 ATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGG 187013
Query 189755 CAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACA 189814
| || | | ||||||||| |||||||||||||| |||||||| ||||| ||||| |
Sbjct 187012 CTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATA 186953
Query 189815 ACTTCCCTCTTGATCTGGCAGC 189836
|||||||||| || || || ||
Sbjct 186952 ACTTCCCTCTAGACCTAGCCGC 186931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634056118962000
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |