Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1325 540 1e-148 seq1658 515 4e-141 seq2002 479 3e-130 >seq1325 Length=385796 Score = 540 bits (598), Expect = 1e-148 Identities = 704/969 (73%), Gaps = 6/969 (1%) Strand=Plus/Plus Query 160591 CTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGG 160650 ||| ||||| ||||||| | || ||||| ||||| ||||||||||||| | ||| Sbjct 7007 CTAAAAACA---GTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGA 7063 Query 160651 CAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGT 160709 | ||||| |||| |||||| || ||| |||||||||| | || || || || ||| Sbjct 7064 CTGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGT 7122 Query 160710 ATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTT 160769 || ||||||| ||| | || || || | || |||||||| || || || ||||| || Sbjct 7123 ATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATT 7182 Query 160770 GTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTT 160829 ||||| |||| || || || | ||||| || || || |||||||| || || || Sbjct 7183 ATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTT 7242 Query 160830 GATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGC 160889 ||||| ||| | ||||| || |||||||| |||| | || | |||| | | || Sbjct 7243 GATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGT 7302 Query 160890 ATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGG 160949 | || || |||||||| |||||||||||| | ||| || || |||||||| ||| Sbjct 7303 GTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGG 7362 Query 160950 ATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCT 161009 || ||||||||||| || || ||||| || || | || || ||| | |||| | Sbjct 7363 ATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTA 7422 Query 161010 TTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTC 161069 | |||||||| || |||||||||||||| || || |||||| |||| |||||||| Sbjct 7423 ATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTT 7482 Query 161070 ATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTT 161129 ||| |||| |||||||| || ||||||||||| ||||| || || | |||||| ||||| Sbjct 7483 ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTA 7542 Query 161130 GCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCC 161189 |||||||| |||| || ||||| | || ||||||||||| |||| |||||| Sbjct 7543 GCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGT 7602 Query 161190 CTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAA 161249 || | | |||||||| | || || || || | ||||||| || | ||||| Sbjct 7603 TTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAG 7662 Query 161250 GAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATAC 161309 ||||| || || || || || |||||||||||||| ||||| || ||||||| ||||| Sbjct 7663 GAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATAT 7722 Query 161310 GCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGT 161369 ||| ||||||||||| ||||| || | ||||||| | || || |||||||| || ||| Sbjct 7723 GCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGT 7781 Query 161370 ATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTC 161429 || ||||| ||||| | ||| | || ||||| |||||| | || || ||||| ||| Sbjct 7782 ATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTC 7841 Query 161430 AACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAAT 161489 ||||| || | | ||| |||| || || | | || |||||||| | | || Sbjct 7842 AACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAAC 7901 Query 161490 CGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGAT 161549 | ||||||| ||||||||||||| ||||| || ||||||||||| |||||||||| || Sbjct 7902 CATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGAC 7961 Query 161550 CTCGCTGCT 161558 || || ||| Sbjct 7962 CTAGCCGCT 7970 >seq1658 Length=355568 Score = 515 bits (570), Expect = 4e-141 Identities = 712/991 (72%), Gaps = 18/991 (2%) Strand=Plus/Minus Query 160581 TGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCA 160640 ||| ||||| || | || |||||||| | || ||||| ||||| |||||||||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 160641 ACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGA 160699 || | ||| | ||||| |||| ||||||| || ||| |||||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 160700 CATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTC 160759 || || ||||| |||||||| ||| | || || || | || ||||| || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 160760 TGGTGCAGTTGTTCCTTCTTCCAACGCAATTG---GTCTTCACTTCTACCCCATTTGGGA 160816 ||| | || ||||| ||| ||| ||| | | ||||| || || || || || Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 160817 AGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCA 160876 ||| || | ||||||| ||| | ||||| ||||||||||| |||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 160877 CTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGG 160936 ||| | | || | || || |||||||| |||||||||||| | ||| || || Sbjct 187619 CTTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGG 187560 Query 160937 CATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATT 160996 |||||||| ||||| |||||||||| || | |||| || || | ||| || || Sbjct 187559 TATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTT 187500 Query 160997 CCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGG 161056 | | |||| || | |||||||| || | |||||||||||| || | |||||||| Sbjct 187499 CTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGG 187440 Query 161057 TACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCA 161116 ||| |||||||| ||| |||| ||| |||| || ||||||||||| ||||| || || || Sbjct 187439 TACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCA 187380 Query 161117 CATGTTGGGTGTTGCTGGTGTC--------TTCGGTGGTTCTCTGTTCTCC-GCAATGCA 161167 |||||| ||||| ||||||| | ||||| | ||||| |||| || ||||| Sbjct 187379 CATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCA 187321 Query 161168 TGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTA 161227 |||||| |||| | |||| || || | |||||||| || || || || || | Sbjct 187320 TGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGA 187261 Query 161228 TGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTT 161287 ||||||| || || ||||| ||||| || || || || || |||||||||||||| || Sbjct 187260 GGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTT 187201 Query 161288 CGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCT 161347 || || ||||||| ||||| || |||||| |||| ||||| || ||||||||| | Sbjct 187200 CGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTT 187141 Query 161348 CGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATT 161407 || || |||||||| || ||||| ||||| | ||| | ||| | || ||||| || Sbjct 187140 AGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTT 187081 Query 161408 CAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAA 161467 |||| | || || ||||| |||||||| || | | ||| |||| || || | || Sbjct 187080 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 187021 Query 161468 CACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAA 161527 || |||||||| | | || ||||||||||||||||||||||| ||||| || ||||| Sbjct 187020 TACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 186961 Query 161528 TGCTCACAACTTCCCTCTGGATCTCGCTGCT 161558 |||||| ||||||||||| || || || ||| Sbjct 186960 TGCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 >seq2002 Length=1023113 Score = 479 bits (530), Expect = 3e-130 Identities = 699/987 (71%), Gaps = 1/987 (0%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || || || || ||||| ||||||||||| || | || |||| ||||||| | || Sbjct 167458 GACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCTTTCGTG-TGCTTATTTCGCC 167516 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| |||| |||||||| ||||| || ||||| ||||| || | || Sbjct 167517 TTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 167576 Query 164037 TCTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCT 164096 | ||| | || ||| |||||| | || ||| | || || || |||||| || | Sbjct 167577 AGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAGTTTCTACTCCTGCTAATAGT 167636 Query 164097 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGG 164156 | | || ||| | | |||| |||||||| || | || || ||||| | | | ||| Sbjct 167637 TTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAAGGAGACTTTACTCGTTGG 167696 Query 164157 TGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGT 164216 || ||| | || || || ||| ||||||| || | || || ||||||| || || ||| Sbjct 167697 TGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTTATAGGT 167756 Query 164217 TTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATT 164276 || ||| | || || || || |||| || || | || || || ||||| || Sbjct 167757 TTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATC 167816 Query 164277 GCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAA 164336 || || |||||||| |||||||| ||||| || ||||| || || || || || || Sbjct 167817 GCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGTCAG 167876 Query 164337 TCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTC 164396 ||| ||||||||||||| || ||||| | || || || || ||||| | | || Sbjct 167877 TCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTATATTTCGATTCATTCTCTTT 167936 Query 164397 CTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATC 164456 | ||||| || ||||| |||||||| || || || ||||||||||| ||||| || | Sbjct 167937 TTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATATGATGGGAGTTGCCGGTGTA 167996 Query 164457 CTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAA 164516 | || | ||||| || || ||||||||||| ||||||||||| |||| ||| |||||| Sbjct 167997 TTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGTAGAAAATAATTTATTTGAA 168056 Query 164517 GATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTAC 164576 || ||||| ||||||| ||| ||| || | || || |||| ||||| ||||| Sbjct 168057 GACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCCGAAGAAACTTAT 168116 Query 164577 TCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAG 164636 || |||||||| || |||||||| ||||| || |||||||| ||||||| |||||| Sbjct 168117 TCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTCCAATAAA 168176 Query 164637 CGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATT 164696 ||||||| || ||||||||| | ||||| || || | || | |||| ||| || || Sbjct 168177 TGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTT 168236 Query 164697 GGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGA 164756 || | ||||| | || | || || ||||| ||||| || | || ||||| || | Sbjct 168237 GGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGAAATCCGT 168296 Query 164757 GCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGA 164816 ||||| || |||||||||||||| || ||||| || || || || ||| | || ||||| Sbjct 168297 GCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGT 168356 Query 164817 CTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAA 164876 | ||||| |||||||| | ||| ||||| || ||| || |||| || ||||| Sbjct 168357 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 168416 Query 164877 GTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||||| || | || ||||| || ||| Sbjct 168417 GTTCTACCCCGTGGAAACGCTCTTTAA 168443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559306934309200