Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11]
3,486 sequences; 1,333,398,936 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 93.3 4e-17
seq60 93.3 4e-17
seq2526 91.5 1e-16
seq1371 91.5 1e-16
seq1358 91.5 1e-16
seq1334 91.5 1e-16
seq1174 91.5 1e-16
seq1466 87.8 2e-15
seq1188 87.8 2e-15
seq1159 87.8 2e-15
seq3200 86.0 6e-15
seq338 86.0 6e-15
seq2024 84.2 2e-14
seq320 78.8 9e-13
seq187 78.8 9e-13
seq19 78.8 9e-13
>seq1094
Length=315333
Score = 93.3 bits (102), Expect = 4e-17
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|||||||| |||||||| ||||||||||| |||||||||| ||| ||||| |||
Sbjct 109915 GGTCGAAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGA 109856
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 109855 AACACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 109810
>seq60
Length=7217281
Score = 93.3 bits (102), Expect = 4e-17
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|||||||| |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 3390421 GGTCGAAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 3390362
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||| ||||| |||||||||||||||
Sbjct 3390361 AAGACCATGTATGGGGGCTGACGCTTGCCCAGTGCCGGAAGGTTAA 3390316
>seq2526
Length=327831
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 20201 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 20142
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 20141 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 20107
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 210158 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 210099
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 210098 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 210064
>seq1371
Length=8752182
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 8489980 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGAACTCTGCTAAGTGGTAACACGAT 8490039
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 8490040 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 8490074
>seq1358
Length=41681
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 18182 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 18123
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 18122 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 18088
>seq1334
Length=80264
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 35992 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 35933
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 35932 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 35898
>seq1174
Length=52200
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 30175 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 30116
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 30115 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 30081
>seq1466
Length=2737832
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||||| |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 1574320 GGTCGAAATGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 1574261
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 1574260 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 1574215
>seq1188
Length=3321382
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|||||||| |||||||| ||||||||||| |||||||||| ||| | ||| ||
Sbjct 2958183 GGTCGAAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGAAAAGTCGT 2958124
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 2958123 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 2958078
>seq1159
Length=32853
Score = 87.8 bits (96), Expect = 2e-15
Identities = 77/95 (81%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 413 ATACCAGGG-GTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 471
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 472 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 506
>seq3200
Length=1577474
Score = 86.0 bits (94), Expect = 6e-15
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | | ||||||||||||||||||||| ||||||| || |||| ||
Sbjct 1501644 ATACCAGGGGGTAGTGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGAAACACGAT 1501703
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
||||| || |||| |||||||||||| |||||||
Sbjct 1501704 GTATAAAGTCTGACACCTGCCCGGTGCTGGAAGGT 1501738
>seq338
Length=2329736
Score = 86.0 bits (94), Expect = 6e-15
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 227027 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 226968
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| ||||||
Sbjct 226967 GTATAGAGTCTGACACCTGCCCGGTGCTTGAAGGT 226933
>seq2024
Length=19976
Score = 84.2 bits (92), Expect = 2e-14
Identities = 77/96 (80%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAA-CACAGCACTCTGCAAACACGAAAGTGGA 113
|||||||| | |||||||||||||||||| ||||| ||||||| || | || ||
Sbjct 1240 ATACCAGGGGGTAGCGACTGTTTATTAAAAAACACAGGACTCTGCTAAGTGGTAACACGA 1181
Query 114 CGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 1180 TGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 1145
>seq320
Length=5058940
Score = 78.8 bits (86), Expect = 9e-13
Identities = 80/103 (78%), Gaps = 1/103 (1%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|||||||| |||||||| |||||||||| ||||||||| ||| ||||| ||
Sbjct 523561 GGTCGAAGTGACCAGGCCCGGACGACTGTTTACCAAAAACACAAGTCTCCGCAAAGTCGT 523502
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
||| | |||| ||| |||||||||||| ||||||||||||
Sbjct 523501 AAGACCATGTATGGGGC-TGACGCCTGCCCAGTGCCGGAAGGT 523460
>seq187
Length=8652782
Score = 78.8 bits (86), Expect = 9e-13
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|||||||| |||||||| |||||||||| |||||||||| ||| ||||| ||
Sbjct 7183076 GGTCGAAGTGACCAGGCCCAGACGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 7183017
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||| ||| ||||||||||| ||
Sbjct 7183016 AAGACCATGTATGGGGGCTGACGCCTACCCAATGCCGGAAGGTCAA 7182971
>seq19
Length=1042096
Score = 78.8 bits (86), Expect = 9e-13
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|||||||| || ||||| ||||||||||| ||||||||| ||| ||||| ||
Sbjct 16504 GGTCGAAGTGACAAGGCCCGGGCGACTGTTTACCAAAAACACACGTCTCCGCAAAGTCGT 16563
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| ||||||||||| |||||||||||| ||
Sbjct 16564 AAGACCATGTATGGGGGCTGACGCCTGCCTAGTGCCGGAAGGTCAA 16609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476783898166
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |