Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1940 131 1e-28 seq3337 127 2e-27 seq2526 125 6e-27 seq2024 125 6e-27 seq1188 125 6e-27 seq1174 125 6e-27 seq281 125 6e-27 seq2314 122 7e-26 seq1094 122 7e-26 seq19 122 7e-26 seq1371 120 3e-25 seq320 118 9e-25 seq1466 113 4e-23 seq2851 104 2e-20 seq142 100 2e-19 >seq1940 Length=2879745 Score = 131 bits (144), Expect = 1e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 470392 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 470333 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | |||||||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 470332 GATCGCGGCCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 470273 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 470272 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 470233 >seq3337 Length=2964736 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 2400535 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 2400476 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | |||||||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 2400475 GATCGCGGCCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 2400416 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||| ||||||| ||||||||||||| || |||| Sbjct 2400415 GATGACTTGATGTCATCCTCACCTTCCTCCGGCTTATCAC 2400376 >seq2526 Length=327831 Score = 125 bits (138), Expect = 6e-27 Identities = 125/161 (78%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | Sbjct 38358 TCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACA 38416 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||| |||| | |||||||| ||||||| |||| ||||||||||||| Sbjct 38417 GCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA 38476 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||||||||||||||||| || | |||| Sbjct 38477 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 38517 >seq2024 Length=19976 Score = 125 bits (138), Expect = 6e-27 Identities = 125/161 (78%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | Sbjct 19395 TCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACA 19453 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||| |||| | |||||||| ||||||| |||| ||||||||||||| Sbjct 19454 GCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA 19513 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||||||||||||||||| || | |||| Sbjct 19514 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 19554 >seq1188 Length=3321382 Score = 125 bits (138), Expect = 6e-27 Identities = 127/162 (78%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGAT-ACAC-TTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||| || ||||||| || ||| || ||| |||| ||||||| ||||||| Sbjct 2962490 CGAGTTGCAGCCTGCAATCCGAAC--CGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGC 2962547 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 ||| | || ||||| ||| |||||||| ||||||| |||| |||||||| | Sbjct 2962548 GGGATCGCAGCCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGC 2962607 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| ||||||||||||||| ||||||||||||| || |||| Sbjct 2962608 ATGATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 2962649 >seq1174 Length=52200 Score = 125 bits (138), Expect = 6e-27 Identities = 125/161 (78%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | Sbjct 48332 TCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACA 48390 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||| |||| | |||||||| ||||||| |||| ||||||||||||| Sbjct 48391 GCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA 48450 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||||||||||||||||| || | |||| Sbjct 48451 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 48491 >seq281 Length=8267699 Score = 125 bits (138), Expect = 6e-27 Identities = 125/161 (78%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | Sbjct 5927258 TCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACA 5927200 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||| |||| | |||||||| ||||||| |||| ||||||||||||| Sbjct 5927199 GCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA 5927140 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||||||||||||||||| || | |||| Sbjct 5927139 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 5927099 Score = 107 bits (118), Expect = 2e-21 Identities = 121/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||| | ||| | | ||||| || ||| ||||| ||| | Sbjct 7329963 TCGAGTTGCAGAGAACAATCTGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACA 7330021 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||| |||| | |||||||| ||||||| | || ||||||||| ||| Sbjct 7330022 GCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGTCCAGCCCATAAGGTCCA 7330081 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||||||||||||||| || | |||| Sbjct 7330082 TGCAGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 7330122 >seq2314 Length=2717392 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||| || || ||||||| ||| | || || |||| ||||||| ||||||||| Sbjct 2311141 CGAGTTGTAGCCTGCAATCCGAACTGAGGACCAGTTATTGGGGTTAGCTCACCCTCGCGG 2311200 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| ||||||| ||| Sbjct 2311201 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGTATAAGGGGCAT 2311260 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 2311261 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 2311300 >seq1094 Length=315333 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || |||| || ||| | ||| |||| ||||||| ||||||||| Sbjct 117179 CGAGTTGCAGCCTGCAATTCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 117238 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 117239 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 117298 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 117299 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 117338 >seq19 Length=1042096 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||||| Sbjct 12032 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCGG 11973 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 11972 GATCGCGACCCTTTGTCCCAGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 11913 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||| | || |||| Sbjct 11912 GATGACTTGACGTCATCCTCACCTTCCTCCAGCTTATCAC 11873 >seq1371 Length=8752182 Score = 120 bits (132), Expect = 3e-25 Identities = 124/161 (77%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| ||||| || ||| | | ||||| || ||| ||||| ||| | Sbjct 4394109 TCGAGTTGCAGAGAACAATACGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACA 4394051 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||| |||| | |||||||| ||||||| |||| ||||||||||||| Sbjct 4394050 GCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA 4393991 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||||||||||||||||| || | |||| Sbjct 4393990 TGTGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 4393950 >seq320 Length=5058940 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| |||| ||||||| ||||||| | Sbjct 528056 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGGTTAGCTCACCCTCGCAG 528115 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | |||||||| | | |||||||| ||||||| |||| |||||||| ||| Sbjct 528116 GAGCGCGGCCCTTTATCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 528175 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 528176 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 528215 >seq1466 Length=2737832 Score = 113 bits (124), Expect = 4e-23 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| | || ||||||| |||| |||| Sbjct 1578805 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTAGGGTTAGCTCACCCTTGCGG 1578864 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | |||||||| ||| || ||||| ||||||| ||| |||||||| ||| Sbjct 1578865 GATCGCGGCCCTTTGTCCCGGCCGTTGTAGCACGTGTGTCGCCAAGGGCATAAGGGGCAT 1578924 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 1578925 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1578964 >seq2851 Length=3570316 Score = 104 bits (114), Expect = 2e-20 Identities = 116/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| || ||||||| ||| | || | ||| |||| ||||||| |||||||| Sbjct 1279167 CGAGTTGCAGCCTGCAATCCGAACTCAGGACGAATTTTTTGGG-TTAGCTCACCCTCGCG 1279225 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | || ||||| ||| ||| |||| | || |||| | |||||||| || Sbjct 1279226 GGATCGCAGCCCTTTGTCCCGGCCACTGTAGCATGTC----GCCCAAGGCATAAGGGGCA 1279281 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| ||||||||||||||| |||||||||||| Sbjct 1279282 TGATGACTTGACGTCATCCTCACCTTCCTCCG 1279313 >seq142 Length=9138691 Score = 100 bits (110), Expect = 2e-19 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 64 TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGA 123 |||| ||| |||| | |||||||| ||||||| |||| ||||||||||||||| Sbjct 3478054 TGGCTTCCCATTGTAACTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGC 3478113 Query 124 GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||| || | |||| Sbjct 3478114 GGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 3478151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415985951420