Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11]
3,486 sequences; 1,333,398,936 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq1466 91.5 1e-16
seq1202 87.8 1e-15
seq320 82.4 5e-14
seq760 73.4 3e-11
seq1188 71.6 1e-10
>seq1466
Length=2737832
Score = 91.5 bits (100), Expect = 1e-16
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| | |||||||| || | || |||||||||| | ||
Sbjct 1573623 TAACTTTTATCCGTTGAGCGACGACCCTTCCACTCGGAACCGTCGGATCACTAAGGCCGA 1573682
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| |||||| | || | ||| ||| |||||||| ||| |||| |||||||
Sbjct 1573683 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCACCCTTCTGCCTTTGCACT 1573740
>seq1202
Length=5845939
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| ||||||||| || || |||||||||| | ||
Sbjct 5248824 TAACTTTTATCCGTTGAGCGACGGCCCTTCCCCTCGGCACCGTCGGATCACTAAGGCCGA 5248765
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| |||||| | || | ||| ||| |||||| | |||||||| |||||||
Sbjct 5248764 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTGCACT 5248707
>seq320
Length=5058940
Score = 82.4 bits (90), Expect = 5e-14
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| ||||||||||||||||| |||||||||| ||| || |||||||||| | ||
Sbjct 522865 TAACTTTTATCCGTTGAGCGGCGGCCCTTCCACTCAGCACCGTCGGATCACTAAGGCCGA 522924
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| || ||| | || | ||| ||| |||||| | ||| |||| |||||||
Sbjct 522925 CTTTCGTCACTACTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 522982
>seq760
Length=2139399
Score = 73.4 bits (80), Expect = 3e-11
Identities = 81/108 (75%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 11 CCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATC 70
||||||||||| |||||||||| || || |||||||||| | || |||||| |
Sbjct 464067 CCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCC 464008
Query 71 TGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
||||| | || | ||| ||| |||||| | ||| |||| |||||||
Sbjct 464007 TGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 463960
>seq1188
Length=3321382
Score = 71.6 bits (78), Expect = 1e-10
Identities = 89/121 (74%), Gaps = 6/121 (5%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACC---GGATCACTATGAC 57
|| |||||||||||| ||||| |||||||||| || | |||| ||||||||| | |
Sbjct 2957486 TAACTTTTATCCGTTCAGCGACGGCCCTTCCACTC---GGCACCGTTGGATCACTAAGGC 2957542
Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117
| |||||| |||||| | || | ||| ||| |||||| | || | || ||||||
Sbjct 2957543 CGACTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCTTTCTTCCTTTGCAC 2957602
Query 118 T 118
|
Sbjct 2957603 T 2957603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351988496200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |