Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq1466 91.5 1e-16 seq1202 87.8 1e-15 seq320 82.4 5e-14 seq760 73.4 3e-11 seq1188 71.6 1e-10 >seq1466 Length=2737832 Score = 91.5 bits (100), Expect = 1e-16 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| | |||||||| || | || |||||||||| | || Sbjct 1573623 TAACTTTTATCCGTTGAGCGACGACCCTTCCACTCGGAACCGTCGGATCACTAAGGCCGA 1573682 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||||| ||| |||| ||||||| Sbjct 1573683 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCACCCTTCTGCCTTTGCACT 1573740 >seq1202 Length=5845939 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| ||||||||| || || |||||||||| | || Sbjct 5248824 TAACTTTTATCCGTTGAGCGACGGCCCTTCCCCTCGGCACCGTCGGATCACTAAGGCCGA 5248765 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | |||||||| ||||||| Sbjct 5248764 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTGCACT 5248707 >seq320 Length=5058940 Score = 82.4 bits (90), Expect = 5e-14 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||||||||| |||||||||| ||| || |||||||||| | || Sbjct 522865 TAACTTTTATCCGTTGAGCGGCGGCCCTTCCACTCAGCACCGTCGGATCACTAAGGCCGA 522924 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| || ||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 522925 CTTTCGTCACTACTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 522982 >seq760 Length=2139399 Score = 73.4 bits (80), Expect = 3e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 11 CCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATC 70 ||||||||||| |||||||||| || || |||||||||| | || |||||| | Sbjct 464067 CCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCC 464008 Query 71 TGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 ||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 464007 TGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 463960 >seq1188 Length=3321382 Score = 71.6 bits (78), Expect = 1e-10 Identities = 89/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACC---GGATCACTATGAC 57 || |||||||||||| ||||| |||||||||| || | |||| ||||||||| | | Sbjct 2957486 TAACTTTTATCCGTTCAGCGACGGCCCTTCCACTC---GGCACCGTTGGATCACTAAGGC 2957542 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| |||||| | || | ||| ||| |||||| | || | || |||||| Sbjct 2957543 CGACTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCTTTCTTCCTTTGCAC 2957602 Query 118 T 118 | Sbjct 2957603 T 2957603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351988496200