Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11]
3,486 sequences; 1,333,398,936 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq1334 80.6 3e-13
seq2526 75.2 1e-11
seq2024 75.2 1e-11
seq1358 75.2 1e-11
seq1174 75.2 1e-11
seq1159 75.2 1e-11
>seq1334
Length=80264
Score = 80.6 bits (88), Expect = 3e-13
Identities = 83/109 (76%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 35341 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 35400
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | |||| |||| |||||| || |||||| ||||| | || ||
Sbjct 35401 TTCGACCAGTCAGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 35449
>seq2526
Length=327831
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 19550 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 19609
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 19610 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 19658
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 209507 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 209566
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 209567 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 209615
>seq2024
Length=19976
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 588 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 647
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 648 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 696
>seq1358
Length=41681
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 17531 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 17590
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 17591 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 17639
>seq1174
Length=52200
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 29524 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 29583
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 29584 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 29632
>seq1159
Length=32853
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 1053 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 994
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 993 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473584006232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |