Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11]
3,486 sequences; 1,333,398,936 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq1188 123 5e-26
seq1466 120 6e-25
seq19 113 8e-23
seq3048 105 1e-20
seq370 105 1e-20
seq320 105 1e-20
seq1774 104 4e-20
seq187 102 1e-19
seq60 95.1 2e-17
seq238 86.0 1e-14
seq2526 77.0 6e-12
seq2400 77.0 6e-12
seq2024 77.0 6e-12
seq1358 77.0 6e-12
seq1334 77.0 6e-12
seq1174 77.0 6e-12
>seq1188
Length=3321382
Score = 123 bits (136), Expect = 5e-26
Identities = 175/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| || || ||| ||||| |||| || ||| | ||| ||||
Sbjct 2959914 GGTGGATACCTAGGCACCTAGAGACGAGGAAGGGCGTATTAATCGACGAAATGCTTCGGG 2959855
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | |||||| ||||| |||||| || |||| ||| |
Sbjct 2959854 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 2959802
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| | |||||||| ||| || | |||| || ||| |||||||| |||||||| |||
Sbjct 2959801 CTTC---TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTAAAACATCTTAGT 2959745
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| |||||||||||||||||||||| ||
Sbjct 2959744 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGTGGCGAGCGAAATGGGAGCAG 2959685
Query 249 CCT 251
|||
Sbjct 2959684 CCT 2959682
>seq1466
Length=2737832
Score = 120 bits (132), Expect = 6e-25
Identities = 174/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| |||| || ||| | ||| ||||
Sbjct 1576035 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAATAATCGACGAAATGCTTCGGG 1575976
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | |||||| ||||| |||||| || |||| ||| |
Sbjct 1575975 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 1575923
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| | |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 1575922 CTTC---TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 1575866
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
|||| ||||||||||| ||| | |||||| ||||| |||||||||||||||| ||
Sbjct 1575865 AGCTAGAGGAAAAGAAAGCAAAAGCAATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 1575806
Query 249 CCT 251
|||
Sbjct 1575805 CCT 1575803
>seq19
Length=1042096
Score = 113 bits (124), Expect = 8e-23
Identities = 172/242 (71%), Gaps = 11/242 (5%)
Strand=Plus/Plus
Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70
|||||| ||| ||| | || ||| ||||| |||| || | ||| | ||| |||||
Sbjct 14792 GTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATTAACGAAATGCTTCGGGG 14851
Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTC 130
||| | ||| | | |||||| ||||| ||||| || |||| ||| | |
Sbjct 14852 AGTTAA-AAATAAGCGGAGATCCGGAGATTCTCGAATAGGTCAACC------TTTCGAAC 14904
Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189
| |||||||| ||| || | |||| || ||| |||||| |||||||||| ||||
Sbjct 14905 TTC---TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAATTGAAACATCTTAGTA 14961
Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249
|| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| |||
Sbjct 14962 GCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGC 15021
Query 250 CT 251
||
Sbjct 15022 CT 15023
>seq3048
Length=3483149
Score = 105 bits (116), Expect = 1e-20
Identities = 172/243 (71%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
|||||| ||| ||| | || ||| ||||| |||| || ||| ||| ||||
Sbjct 3160884 GGTGGACACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATCGACGAAGTGCTTCGGG 3160825
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | |||||| ||||| |||||| || |||| ||| |
Sbjct 3160824 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGA- 3160773
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
||| | |||| ||| ||| || | |||| | ||| |||||| |||||||||| |||
Sbjct 3160772 -ATTTC-TGCTAAATCCATGGGCAGGCAAGATACAACCTGGCGAATTGAAACATCTTAGT 3160715
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||||||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 3160714 AGCCAGAGGAAAAGAAATCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 3160655
Query 249 CCT 251
|||
Sbjct 3160654 CCT 3160652
>seq370
Length=27250
Score = 105 bits (116), Expect = 1e-20
Identities = 172/243 (71%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
|||||| ||| ||| | || ||| ||||| |||| || ||| ||| ||||
Sbjct 14106 GGTGGACACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATCGACGAAGTGCTTCGGG 14047
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | |||||| ||||| |||||| || |||| ||| |
Sbjct 14046 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGA- 13995
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
||| | |||| ||| ||| || | |||| | ||| |||||| |||||||||| |||
Sbjct 13994 -ATTTC-TGCTAAATCCATGGGCAGGCAAGATACAACCTGGCGAATTGAAACATCTTAGT 13937
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||||||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 13936 AGCCAGAGGAAAAGAAATCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 13877
Query 249 CCT 251
|||
Sbjct 13876 CCT 13874
>seq320
Length=5058940
Score = 105 bits (116), Expect = 1e-20
Identities = 171/243 (70%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| |||| || ||| | ||| ||||
Sbjct 525277 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATCGACGAAATGCTTCGGG 525218
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| || || | |||||| ||||| |||||| || |||| ||| |
Sbjct 525217 GAGTTGAAAATCAG-CGGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 525165
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| | |||||||| ||| || | |||| || ||| ||| ||||||||||||| |||
Sbjct 525164 CTTC---TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCAAACTGAAACATCTTAGT 525108
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| | |||||||||||||| ||
Sbjct 525107 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGCCGAGCGAAATGGGAGCAG 525048
Query 249 CCT 251
|||
Sbjct 525047 CCT 525045
>seq1774
Length=4209568
Score = 104 bits (114), Expect = 4e-20
Identities = 158/222 (71%), Gaps = 11/222 (5%)
Strand=Plus/Plus
Query 31 AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGA 90
|| ||| ||||| |||| || | | | ||| |||||||| | ||| | | ||
Sbjct 457615 AGACGAGGAAGGGCGTATTAATCGACAAAATGCTTCGGGGAGTT-GAAAATAAGCGGAGA 457673
Query 91 TCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAG 150
|||| ||||| |||||| || |||| ||| | | | |||||||| ||| |
Sbjct 457674 TCCGGAGATTCCCGAATAGGTCAACC------TTTCGAACTTC---TGCTGAATCCATGG 457724
Query 151 GTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAA 209
| | |||| || ||| |||||||||||||||| |||||| ||||||||||| |||
Sbjct 457725 GCAGGCAAGAGACAACCTAGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAA 457784
Query 210 CCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
| ||||||| ||||| |||||||||||||||| |||||
Sbjct 457785 AAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 457826
>seq187
Length=8652782
Score = 102 bits (112), Expect = 1e-19
Identities = 93/116 (80%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|||||||| ||| || | | || | ||| ||||||||||||||||| ||||||| |
Sbjct 7184697 TGCTGAATCCATGGGCAGGAAAGAAACAACCTGGCGAACTGAAACATCTTAGTAGCTAGA 7184638
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
|||||||||| ||| | ||||||| ||||| |||||||||||||||| |||||
Sbjct 7184637 GGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 7184582
>seq60
Length=7217281
Score = 95.1 bits (104), Expect = 2e-17
Identities = 166/236 (70%), Gaps = 12/236 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| |||| || ||| | ||| ||||
Sbjct 3394350 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATCGACGAAATGCTTCGGG 3394291
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | |||||| ||||| |||||| || |||| ||||
Sbjct 3394290 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAACCT-----TTTGA-- 3394239
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| | | |||||||| |||| | | |||| || ||| ||||||||||||||||| |||
Sbjct 3394238 -ACTTC-TGCTGAATCCATATGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 3394181
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244
||| ||||||| || ||| | |||| || ||||| ||||||| ||||||||
Sbjct 3394180 AGCCAGAGGAAAAATAAGCAAAAGTGATT-CCGTAGTAGCGGCGAGCAAAATGGGA 3394126
>seq238
Length=2033400
Score = 86.0 bits (94), Expect = 1e-14
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 162 GAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCA 221
|||| ||||||||||||||||| |||||| ||||||| || ||| | |||||||
Sbjct 1872130 GAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAATAAGCAAAAGTGATTCCCG 1872071
Query 222 AAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
||||| |||||||||||||||| |||||
Sbjct 1872070 TAGTAGCGGCGAGCGAAATGGGAGCAGCCT 1872041
>seq2526
Length=327831
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 22484 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 22425
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 22424 GGCGAGCGAGAGCGGAT 22408
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 212441 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 212382
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 212381 GGCGAGCGAGAGCGGAT 212365
>seq2400
Length=2569402
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 280322 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 280263
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 280262 GGCGAGCGAGAGCGGAT 280246
>seq2024
Length=19976
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 3523 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 3464
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 3463 GGCGAGCGAGAGCGGAT 3447
>seq1358
Length=41681
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 20465 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 20406
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 20405 GGCGAGCGAGAGCGGAT 20389
>seq1334
Length=80264
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 38275 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 38216
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 38215 GGCGAGCGAGAGCGGAT 38199
>seq1174
Length=52200
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 32458 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 32399
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 32398 GGCGAGCGAGAGCGGAT 32382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918367984576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |