Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1188 123 5e-26 seq1466 120 6e-25 seq19 113 8e-23 seq3048 105 1e-20 seq370 105 1e-20 seq320 105 1e-20 seq1774 104 4e-20 seq187 102 1e-19 seq60 95.1 2e-17 seq238 86.0 1e-14 seq2526 77.0 6e-12 seq2400 77.0 6e-12 seq2024 77.0 6e-12 seq1358 77.0 6e-12 seq1334 77.0 6e-12 seq1174 77.0 6e-12 >seq1188 Length=3321382 Score = 123 bits (136), Expect = 5e-26 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| || || ||| ||||| |||| || ||| | ||| |||| Sbjct 2959914 GGTGGATACCTAGGCACCTAGAGACGAGGAAGGGCGTATTAATCGACGAAATGCTTCGGG 2959855 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | |||||| ||||| |||||| || |||| ||| | Sbjct 2959854 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 2959802 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | |||||||| ||| || | |||| || ||| |||||||| |||||||| ||| Sbjct 2959801 CTTC---TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTAAAACATCTTAGT 2959745 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| |||||||||||||||||||||| || Sbjct 2959744 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGTGGCGAGCGAAATGGGAGCAG 2959685 Query 249 CCT 251 ||| Sbjct 2959684 CCT 2959682 >seq1466 Length=2737832 Score = 120 bits (132), Expect = 6e-25 Identities = 174/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| |||| || ||| | ||| |||| Sbjct 1576035 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAATAATCGACGAAATGCTTCGGG 1575976 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | |||||| ||||| |||||| || |||| ||| | Sbjct 1575975 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 1575923 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 1575922 CTTC---TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 1575866 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 |||| ||||||||||| ||| | |||||| ||||| |||||||||||||||| || Sbjct 1575865 AGCTAGAGGAAAAGAAAGCAAAAGCAATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 1575806 Query 249 CCT 251 ||| Sbjct 1575805 CCT 1575803 >seq19 Length=1042096 Score = 113 bits (124), Expect = 8e-23 Identities = 172/242 (71%), Gaps = 11/242 (5%) Strand=Plus/Plus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70 |||||| ||| ||| | || ||| ||||| |||| || | ||| | ||| ||||| Sbjct 14792 GTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATTAACGAAATGCTTCGGGG 14851 Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTC 130 ||| | ||| | | |||||| ||||| ||||| || |||| ||| | | Sbjct 14852 AGTTAA-AAATAAGCGGAGATCCGGAGATTCTCGAATAGGTCAACC------TTTCGAAC 14904 Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 | |||||||| ||| || | |||| || ||| |||||| |||||||||| |||| Sbjct 14905 TTC---TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAATTGAAACATCTTAGTA 14961 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 || ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||| Sbjct 14962 GCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGC 15021 Query 250 CT 251 || Sbjct 15022 CT 15023 >seq3048 Length=3483149 Score = 105 bits (116), Expect = 1e-20 Identities = 172/243 (71%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||| ||| ||| | || ||| ||||| |||| || ||| ||| |||| Sbjct 3160884 GGTGGACACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATCGACGAAGTGCTTCGGG 3160825 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | |||||| ||||| |||||| || |||| ||| | Sbjct 3160824 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGA- 3160773 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 ||| | |||| ||| ||| || | |||| | ||| |||||| |||||||||| ||| Sbjct 3160772 -ATTTC-TGCTAAATCCATGGGCAGGCAAGATACAACCTGGCGAATTGAAACATCTTAGT 3160715 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||||||| | ||||||| ||||| |||||||||||||||| || Sbjct 3160714 AGCCAGAGGAAAAGAAATCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 3160655 Query 249 CCT 251 ||| Sbjct 3160654 CCT 3160652 >seq370 Length=27250 Score = 105 bits (116), Expect = 1e-20 Identities = 172/243 (71%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||| ||| ||| | || ||| ||||| |||| || ||| ||| |||| Sbjct 14106 GGTGGACACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATCGACGAAGTGCTTCGGG 14047 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | |||||| ||||| |||||| || |||| ||| | Sbjct 14046 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGA- 13995 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 ||| | |||| ||| ||| || | |||| | ||| |||||| |||||||||| ||| Sbjct 13994 -ATTTC-TGCTAAATCCATGGGCAGGCAAGATACAACCTGGCGAATTGAAACATCTTAGT 13937 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||||||| | ||||||| ||||| |||||||||||||||| || Sbjct 13936 AGCCAGAGGAAAAGAAATCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 13877 Query 249 CCT 251 ||| Sbjct 13876 CCT 13874 >seq320 Length=5058940 Score = 105 bits (116), Expect = 1e-20 Identities = 171/243 (70%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| |||| || ||| | ||| |||| Sbjct 525277 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATCGACGAAATGCTTCGGG 525218 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| || || | |||||| ||||| |||||| || |||| ||| | Sbjct 525217 GAGTTGAAAATCAG-CGGAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 525165 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | |||||||| ||| || | |||| || ||| ||| ||||||||||||| ||| Sbjct 525164 CTTC---TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCAAACTGAAACATCTTAGT 525108 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| | |||||||||||||| || Sbjct 525107 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGCCGAGCGAAATGGGAGCAG 525048 Query 249 CCT 251 ||| Sbjct 525047 CCT 525045 >seq1774 Length=4209568 Score = 104 bits (114), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 11/222 (5%) Strand=Plus/Plus Query 31 AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGA 90 || ||| ||||| |||| || | | | ||| |||||||| | ||| | | || Sbjct 457615 AGACGAGGAAGGGCGTATTAATCGACAAAATGCTTCGGGGAGTT-GAAAATAAGCGGAGA 457673 Query 91 TCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAG 150 |||| ||||| |||||| || |||| ||| | | | |||||||| ||| | Sbjct 457674 TCCGGAGATTCCCGAATAGGTCAACC------TTTCGAACTTC---TGCTGAATCCATGG 457724 Query 151 GTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAA 209 | | |||| || ||| |||||||||||||||| |||||| ||||||||||| ||| Sbjct 457725 GCAGGCAAGAGACAACCTAGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAA 457784 Query 210 CCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | ||||||| ||||| |||||||||||||||| ||||| Sbjct 457785 AAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 457826 >seq187 Length=8652782 Score = 102 bits (112), Expect = 1e-19 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | | || | ||| ||||||||||||||||| ||||||| | Sbjct 7184697 TGCTGAATCCATGGGCAGGAAAGAAACAACCTGGCGAACTGAAACATCTTAGTAGCTAGA 7184638 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||||| ||||| |||||||||||||||| ||||| Sbjct 7184637 GGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 7184582 >seq60 Length=7217281 Score = 95.1 bits (104), Expect = 2e-17 Identities = 166/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| |||| || ||| | ||| |||| Sbjct 3394350 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTATTAATCGACGAAATGCTTCGGG 3394291 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | |||||| ||||| |||||| || |||| |||| Sbjct 3394290 GAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGTCAACCT-----TTTGA-- 3394239 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | |||||||| |||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 3394238 -ACTTC-TGCTGAATCCATATGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 3394181 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||| ||||||| || ||| | |||| || ||||| ||||||| |||||||| Sbjct 3394180 AGCCAGAGGAAAAATAAGCAAAAGTGATT-CCGTAGTAGCGGCGAGCAAAATGGGA 3394126 >seq238 Length=2033400 Score = 86.0 bits (94), Expect = 1e-14 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 162 GAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCA 221 |||| ||||||||||||||||| |||||| ||||||| || ||| | ||||||| Sbjct 1872130 GAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAATAAGCAAAAGTGATTCCCG 1872071 Query 222 AAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||| |||||||||||||||| ||||| Sbjct 1872070 TAGTAGCGGCGAGCGAAATGGGAGCAGCCT 1872041 >seq2526 Length=327831 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 22484 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 22425 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 22424 GGCGAGCGAGAGCGGAT 22408 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 212441 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 212382 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 212381 GGCGAGCGAGAGCGGAT 212365 >seq2400 Length=2569402 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 280322 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 280263 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 280262 GGCGAGCGAGAGCGGAT 280246 >seq2024 Length=19976 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 3523 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 3464 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 3463 GGCGAGCGAGAGCGGAT 3447 >seq1358 Length=41681 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 20465 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 20406 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 20405 GGCGAGCGAGAGCGGAT 20389 >seq1334 Length=80264 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 38275 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 38216 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 38215 GGCGAGCGAGAGCGGAT 38199 >seq1174 Length=52200 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 32458 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 32399 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 32398 GGCGAGCGAGAGCGGAT 32382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918367984576