Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2526 120 6e-25 seq1174 120 6e-25 seq1940 118 2e-24 seq2314 116 8e-24 seq89 113 1e-22 seq1466 104 5e-20 seq1094 104 5e-20 seq1188 100 6e-19 seq320 100 6e-19 seq2752 98.7 2e-18 seq19 95.1 3e-17 seq3210 91.5 3e-16 seq1580 91.5 3e-16 seq661 84.2 5e-14 seq2851 82.4 2e-13 >seq2526 Length=327831 Score = 120 bits (132), Expect = 6e-25 Identities = 161/223 (72%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACC-TTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||| ||||||| | | | ||| ||| || |||||| | | ||||| || | || Sbjct 39567 AAAGAGCTTTACAAGCGGCATTACCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT 39626 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||| ||||| |||||||||| ||||| ||||| || ||||||||||| Sbjct 39627 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 39686 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||| ||| | ||| |||| | |||| ||| ||| || Sbjct 39687 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 39746 Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303 ||| || |||||||||| ||||| | |||| ||| || Sbjct 39747 ACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 39789 >seq1174 Length=52200 Score = 120 bits (132), Expect = 6e-25 Identities = 161/223 (72%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACC-TTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||| ||||||| | | | ||| ||| || |||||| | | ||||| || | || Sbjct 49541 AAAGAGCTTTACAAGCGGCATTACCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT 49600 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||| ||||| |||||||||| ||||| ||||| || ||||||||||| Sbjct 49601 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 49660 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||| ||| | ||| |||| | |||| ||| ||| || Sbjct 49661 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 49720 Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303 ||| || |||||||||| ||||| | |||| ||| || Sbjct 49721 ACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 49763 >seq1940 Length=2879745 Score = 118 bits (130), Expect = 2e-24 Identities = 193/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | | ||| || | Sbjct 469595 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCGGATACCGTCAT-----------T 469547 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| | | |||| | ||||| ||| ||||| Sbjct 469546 GC------TTCTTCTCCGGGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGC 469494 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 469493 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 469434 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 469433 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTAAT 469374 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 469373 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 469335 >seq2314 Length=2717392 Score = 116 bits (128), Expect = 8e-24 Identities = 146/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||||| || || ||| ||||| || | ||| | ||||| Sbjct 2312001 AAAAGAAGTTCATGACCCGTAGG-CCATCTACCTCCACGCGACATTGCTCCGTTAGACTT 2312059 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||| ||| ||| ||||||||||| Sbjct 2312060 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGAAGTCTGGGCCGTGTCTCAG 2312119 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 2312120 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 2312179 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 2312180 GCCTCACCAACTAGCTAAT 2312198 >seq89 Length=2496132 Score = 113 bits (124), Expect = 1e-22 Identities = 145/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||||| || | | |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 781104 AAAAGAAATTCATGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 781162 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 781163 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 781222 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 781223 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 781282 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 781283 GCCTCACCAACTAGCTAAT 781301 >seq1466 Length=2737832 Score = 104 bits (114), Expect = 5e-20 Identities = 143/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||| | ||||| | | ||||| || | ||| |||| | Sbjct 1579665 AAAAGAAGTTCATGACCCGTGGG-CCTTCTACTTCCACGCAACATTGCTCCGTCAGGATT 1579723 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| ||||||||||||||||| |||| ||| |||||||||| Sbjct 1579724 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAAGAGTCTGGGTCGTGTCTCAG 1579783 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 1579784 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 1579843 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 1579844 GCCTCACCAACTAGCTAAT 1579862 >seq1094 Length=315333 Score = 104 bits (114), Expect = 5e-20 Identities = 159/228 (70%), Gaps = 18/228 (8%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | ||| || | Sbjct 117976 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGCCAT-----------T 118024 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | | |||||||||| | | |||| | ||||| ||| ||||| Sbjct 118025 GC------TTCTTCTCCGAGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGC 118077 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 || | ||| |||| || ||| |||||| || ||||| ||||| |||||||||||| Sbjct 118078 GACATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGGTGCCTCCCGTAG 118137 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| ||| |||||||| ||| ||| ||||| || | ||||||| || Sbjct 118138 AAGTCTGGGCCGTGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGA 118185 >seq1188 Length=3321382 Score = 100 bits (110), Expect = 6e-19 Identities = 152/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||| | | ||| ||| ||||| | | ||| |||| | Sbjct 2963350 AAAAGAAGTTCATGACCCGTGGG-CATTCTACCTCCACGCGGCATTGCTCCATCAGGATT 2963408 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||| ||||| ||||||||||| ||| ||||||||||| Sbjct 2963409 TCGCCCATTGCGGAAAATTCCCCACTACTGCCCCCCGTAGGAGTCTGGGCCGTGTCTCAG 2963468 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||||||||| || | |||| || || | ||| ||| | | || ||| || || Sbjct 2963469 TCCCAATGTGGCTGATCATCCTTTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 2963528 Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 || | || |||| ||||| |||| |||| || Sbjct 2963529 GCCTCACCAACTAGCTAATCAGACGCGACCCCCTC 2963563 >seq320 Length=5058940 Score = 100 bits (110), Expect = 6e-19 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| ||| ||||| | | ||| |||| || ||| |||||| || ||||| || Sbjct 528939 CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCA 528998 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||||||||||||||| ||| | |||||||||| ||| ||||| || | |||||| Sbjct 528999 CTGCTGCCTCCCGTAGGAGTCTGGTCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 529058 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || | ||| ||| | | || ||| || || || | || |||| ||||| Sbjct 529059 TGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 529113 >seq2752 Length=1580380 Score = 98.7 bits (108), Expect = 2e-18 Identities = 101/131 (77%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACC-TTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||| ||||||| | | | ||| ||| || |||||| | | ||||| || | || Sbjct 80157 AAAGAGCTTTACAAGCGGCATTACCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT 80098 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||| ||||| |||||||||| ||||| ||||| || ||||||||||| Sbjct 80097 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 80038 Query 201 TTCCAATGTGG 211 | ||| ||||| Sbjct 80037 TCCCAGTGTGG 80027 >seq19 Length=1042096 Score = 95.1 bits (104), Expect = 3e-17 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||| | ||||| ||| ||||| | | ||| ||| | Sbjct 11172 AAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAAGATT 11114 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | ||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 11113 TTGCCCATTACGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 11054 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | | ||||| || | ||| ||| | | || ||| || || Sbjct 11053 TCCCAGTGTGGCTGATCATTCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 10994 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 10993 GCCTCACCAACTAGCTAAT 10975 >seq3210 Length=6607953 Score = 91.5 bits (100), Expect = 3e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| | | ||||| || | || ||| |||||| |||| ||||| |||||||||| | Sbjct 3602522 TCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCC 3602581 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCT 222 |||| ||||| || |||||||||||| ||| ||||| || | |||| Sbjct 3602582 CCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCT 3602629 >seq1580 Length=5301032 Score = 91.5 bits (100), Expect = 3e-16 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127 ||| ||| | | |||| ||||| | | |||| | | ||| ||| ||||| | | | Sbjct 1060803 TTTCTTCTCCGAGAAAATAAGTTCATGACCCGTGGG-CTTTCTACCTCCACGCGGCATTG 1060861 Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 || ||||||| ||| |||||| || ||||| | || ||||||||||||||||| | Sbjct 1060862 CTCCGTCAGACTTTCGCCCATTGCGGAAAATTCCCCCCTCCTGCCTCCCGTAGGAGTCTA 1060921 Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGC 247 | |||||||| ||| | | ||||| || | ||||||| || | ||| ||| | | | Sbjct 1060922 GGCCGTGTCTTAGTCCAAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATTGCC 1060981 Query 248 TAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||| || || || | || |||| ||||| Sbjct 1060982 TTGGTAAGCTATTGCCTCACCAACTAGCTAAT 1061013 >seq661 Length=2431326 Score = 84.2 bits (92), Expect = 5e-14 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| || ||||| |||||||||||| |||||||| | | ||||||||||| || Sbjct 670351 CCATTGCAAAAAATTCCCCACTGCTGCCTCTTGTAGGAGTCTAGGTCGTGTCTCAGTCCC 670410 Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCC 264 | ||||| || | |||||||||||| |||| ||| | | || ||| || || || Sbjct 670411 AGTGTGGCTGATCATCCTCTCAGAACAGCTATTGATCATCGCCTTGGTAAGCTATTGCCT 670470 Query 265 CGCCTACTA 273 | || |||| Sbjct 670471 CACCAACTA 670479 >seq2851 Length=3570316 Score = 82.4 bits (90), Expect = 2e-13 Identities = 122/172 (71%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||||| || | || |||| | ||||| ||| ||| | || | ||| |||| || Sbjct 1279963 AAAAGAATTTCAAAACCCGTGG--CCTTCTACCTCCACACGACATTGCTCCGTCAGGCTT 1280020 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 || | |||| || ||||| |||| || |||||||||||||| | | |||| |||||| Sbjct 1280021 TCCCCTATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTCTAGGCCGTATCTCAG 1280080 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 | ||| ||||| || | |||| | || | ||| ||||| |||| ||| Sbjct 1280081 TCCCAGTGTGGCTGATCATCCTATTGGACCAGCTACTTATCGTTGGCTTGGT 1280132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068762741632