Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11]
3,486 sequences; 1,333,398,936 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq2526 120 6e-25
seq1174 120 6e-25
seq1940 118 2e-24
seq2314 116 8e-24
seq89 113 1e-22
seq1466 104 5e-20
seq1094 104 5e-20
seq1188 100 6e-19
seq320 100 6e-19
seq2752 98.7 2e-18
seq19 95.1 3e-17
seq3210 91.5 3e-16
seq1580 91.5 3e-16
seq661 84.2 5e-14
seq2851 82.4 2e-13
>seq2526
Length=327831
Score = 120 bits (132), Expect = 6e-25
Identities = 161/223 (72%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 82 AAAGAAGTTTACAATCCGTAGAACC-TTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
||||| ||||||| | | | ||| ||| || |||||| | | ||||| || | ||
Sbjct 39567 AAAGAGCTTTACAAGCGGCATTACCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT 39626
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| |||| ||||| |||||||||| ||||| ||||| || |||||||||||
Sbjct 39627 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 39686
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | ||| ||| | ||| |||| | |||| ||| ||| ||
Sbjct 39687 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 39746
Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303
||| || |||||||||| ||||| | |||| ||| ||
Sbjct 39747 ACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 39789
>seq1174
Length=52200
Score = 120 bits (132), Expect = 6e-25
Identities = 161/223 (72%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 82 AAAGAAGTTTACAATCCGTAGAACC-TTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
||||| ||||||| | | | ||| ||| || |||||| | | ||||| || | ||
Sbjct 49541 AAAGAGCTTTACAAGCGGCATTACCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT 49600
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| |||| ||||| |||||||||| ||||| ||||| || |||||||||||
Sbjct 49601 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 49660
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | ||| ||| | ||| |||| | |||| ||| ||| ||
Sbjct 49661 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 49720
Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303
||| || |||||||||| ||||| | |||| ||| ||
Sbjct 49721 ACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 49763
>seq1940
Length=2879745
Score = 118 bits (130), Expect = 2e-24
Identities = 193/279 (69%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | | ||| || |
Sbjct 469595 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCGGATACCGTCAT-----------T 469547
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| | | |||| | ||||| ||| |||||
Sbjct 469546 GC------TTCTTCTCCGGGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGC 469494
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 469493 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 469434
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 469433 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTAAT 469374
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 469373 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 469335
>seq2314
Length=2717392
Score = 116 bits (128), Expect = 8e-24
Identities = 146/199 (73%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| | | |||||| || || ||| ||||| || | ||| | |||||
Sbjct 2312001 AAAAGAAGTTCATGACCCGTAGG-CCATCTACCTCCACGCGACATTGCTCCGTTAGACTT 2312059
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||||||||||||||||| ||| ||| |||||||||||
Sbjct 2312060 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGAAGTCTGGGCCGTGTCTCAG 2312119
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | ||||||| || | ||| ||| | | || ||| || ||
Sbjct 2312120 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 2312179
Query 261 ACCCCGCCTACTACCTAAT 279
|| | || |||| |||||
Sbjct 2312180 GCCTCACCAACTAGCTAAT 2312198
>seq89
Length=2496132
Score = 113 bits (124), Expect = 1e-22
Identities = 145/199 (73%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
||||||| || | | |||| | ||||| ||| ||||| | | ||| |||| ||
Sbjct 781104 AAAAGAAATTCATGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 781162
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 781163 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 781222
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | ||||||| || | ||| ||| | | || ||| || ||
Sbjct 781223 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 781282
Query 261 ACCCCGCCTACTACCTAAT 279
|| | || |||| |||||
Sbjct 781283 GCCTCACCAACTAGCTAAT 781301
>seq1466
Length=2737832
Score = 104 bits (114), Expect = 5e-20
Identities = 143/199 (72%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| | | |||| | ||||| | | ||||| || | ||| |||| |
Sbjct 1579665 AAAAGAAGTTCATGACCCGTGGG-CCTTCTACTTCCACGCAACATTGCTCCGTCAGGATT 1579723
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| ||||||||||||||||| |||| ||| ||||||||||
Sbjct 1579724 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAAGAGTCTGGGTCGTGTCTCAG 1579783
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | ||||||| || | ||| ||| | | || ||| || ||
Sbjct 1579784 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 1579843
Query 261 ACCCCGCCTACTACCTAAT 279
|| | || |||| |||||
Sbjct 1579844 GCCTCACCAACTAGCTAAT 1579862
>seq1094
Length=315333
Score = 104 bits (114), Expect = 5e-20
Identities = 159/228 (70%), Gaps = 18/228 (8%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | ||| || |
Sbjct 117976 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCGGATACCGCCAT-----------T 118024
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | | |||||||||| | | |||| | ||||| ||| |||||
Sbjct 118025 GC------TTCTTCTCCGAGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGC 118077
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
|| | ||| |||| || ||| |||||| || ||||| ||||| ||||||||||||
Sbjct 118078 GACATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGGTGCCTCCCGTAG 118137
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
||| ||| |||||||| ||| ||| ||||| || | ||||||| ||
Sbjct 118138 AAGTCTGGGCCGTGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGA 118185
>seq1188
Length=3321382
Score = 100 bits (110), Expect = 6e-19
Identities = 152/215 (71%), Gaps = 1/215 (0%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| | | |||| | | ||| ||| ||||| | | ||| |||| |
Sbjct 2963350 AAAAGAAGTTCATGACCCGTGGG-CATTCTACCTCCACGCGGCATTGCTCCATCAGGATT 2963408
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||| ||||| ||||||||||| ||| |||||||||||
Sbjct 2963409 TCGCCCATTGCGGAAAATTCCCCACTACTGCCCCCCGTAGGAGTCTGGGCCGTGTCTCAG 2963468
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||||||||| || | |||| || || | ||| ||| | | || ||| || ||
Sbjct 2963469 TCCCAATGTGGCTGATCATCCTTTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 2963528
Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295
|| | || |||| ||||| |||| |||| ||
Sbjct 2963529 GCCTCACCAACTAGCTAATCAGACGCGACCCCCTC 2963563
>seq320
Length=5058940
Score = 100 bits (110), Expect = 6e-19
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| ||| ||||| | | ||| |||| || ||| |||||| || ||||| ||
Sbjct 528939 CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCA 528998
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||||||||||||||| ||| | |||||||||| ||| ||||| || | ||||||
Sbjct 528999 CTGCTGCCTCCCGTAGGAGTCTGGTCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 529058
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
|| | ||| ||| | | || ||| || || || | || |||| |||||
Sbjct 529059 TGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 529113
>seq2752
Length=1580380
Score = 98.7 bits (108), Expect = 2e-18
Identities = 101/131 (77%), Gaps = 1/131 (1%)
Strand=Plus/Minus
Query 82 AAAGAAGTTTACAATCCGTAGAACC-TTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
||||| ||||||| | | | ||| ||| || |||||| | | ||||| || | ||
Sbjct 80157 AAAGAGCTTTACAAGCGGCATTACCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT 80098
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| |||| ||||| |||||||||| ||||| ||||| || |||||||||||
Sbjct 80097 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 80038
Query 201 TTCCAATGTGG 211
| ||| |||||
Sbjct 80037 TCCCAGTGTGG 80027
>seq19
Length=1042096
Score = 95.1 bits (104), Expect = 3e-17
Identities = 141/199 (71%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| | | |||| | ||||| ||| ||||| | | ||| ||| |
Sbjct 11172 AAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAAGATT 11114
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
| | ||||| || ||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 11113 TTGCCCATTACGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 11054
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | | ||||| || | ||| ||| | | || ||| || ||
Sbjct 11053 TCCCAGTGTGGCTGATCATTCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 10994
Query 261 ACCCCGCCTACTACCTAAT 279
|| | || |||| |||||
Sbjct 10993 GCCTCACCAACTAGCTAAT 10975
>seq3210
Length=6607953
Score = 91.5 bits (100), Expect = 3e-16
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174
|||||| | | ||||| || | || ||| |||||| |||| ||||| |||||||||| |
Sbjct 3602522 TCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCC 3602581
Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCT 222
|||| ||||| || |||||||||||| ||| ||||| || | ||||
Sbjct 3602582 CCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCT 3602629
>seq1580
Length=5301032
Score = 91.5 bits (100), Expect = 3e-16
Identities = 148/212 (70%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127
||| ||| | | |||| ||||| | | |||| | | ||| ||| ||||| | | |
Sbjct 1060803 TTTCTTCTCCGAGAAAATAAGTTCATGACCCGTGGG-CTTTCTACCTCCACGCGGCATTG 1060861
Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187
|| ||||||| ||| |||||| || ||||| | || ||||||||||||||||| |
Sbjct 1060862 CTCCGTCAGACTTTCGCCCATTGCGGAAAATTCCCCCCTCCTGCCTCCCGTAGGAGTCTA 1060921
Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGC 247
| |||||||| ||| | | ||||| || | ||||||| || | ||| ||| | | |
Sbjct 1060922 GGCCGTGTCTTAGTCCAAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATTGCC 1060981
Query 248 TAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| ||| || || || | || |||| |||||
Sbjct 1060982 TTGGTAAGCTATTGCCTCACCAACTAGCTAAT 1061013
>seq661
Length=2431326
Score = 84.2 bits (92), Expect = 5e-14
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204
|||||| || ||||| |||||||||||| |||||||| | | ||||||||||| ||
Sbjct 670351 CCATTGCAAAAAATTCCCCACTGCTGCCTCTTGTAGGAGTCTAGGTCGTGTCTCAGTCCC 670410
Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCC 264
| ||||| || | |||||||||||| |||| ||| | | || ||| || || ||
Sbjct 670411 AGTGTGGCTGATCATCCTCTCAGAACAGCTATTGATCATCGCCTTGGTAAGCTATTGCCT 670470
Query 265 CGCCTACTA 273
| || ||||
Sbjct 670471 CACCAACTA 670479
>seq2851
Length=3570316
Score = 82.4 bits (90), Expect = 2e-13
Identities = 122/172 (71%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
||||||| || | || |||| | ||||| ||| ||| | || | ||| |||| ||
Sbjct 1279963 AAAAGAATTTCAAAACCCGTGG--CCTTCTACCTCCACACGACATTGCTCCGTCAGGCTT 1280020
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
|| | |||| || ||||| |||| || |||||||||||||| | | |||| ||||||
Sbjct 1280021 TCCCCTATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTCTAGGCCGTATCTCAG 1280080
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252
| ||| ||||| || | |||| | || | ||| ||||| |||| |||
Sbjct 1280081 TCCCAGTGTGGCTGATCATCCTATTGGACCAGCTACTTATCGTTGGCTTGGT 1280132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068762741632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |