Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1371 136 3e-27 seq2087 129 5e-25 >seq1371 Length=8752182 Score = 136 bits (150), Expect = 3e-27 Identities = 546/846 (65%), Gaps = 23/846 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || |||||||| |||||||| | || || |||||| | || |||| Sbjct 1700728 ATGTACAAAAAAGCTGAAGCTTCATTCTGGACTGCCGAAGAAGTCGATCTTTCGCAAGAT 1700669 Query 61156 ATGAATGACTGGG--AGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 | | |||||| | | | ||| | | || ||||| |||||||| | || | | Sbjct 1700668 GTTCGTCACTGGGAAACCATCTTAACCACCGACGAACAGCATTTCATCACCCACATCCTC 1700609 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || ||||| ||||| |||||| | | | | ||| | || Sbjct 1700608 GCCTTCTTCGCCGCATCAGACGGCATCGTTCTCGAGAATCTCGCCGGAAGATTCATGAAG 1700549 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 ||||| || || | || || || |||||| |||||||| || ||||| || || | Sbjct 1700548 GAGGTTCAGGTTGCTGAAGCTCGCGCTTTCTATGGCTTCCAAATCGCCATTGAAAACATT 1700489 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 ||||| || |||||| | |||| | || || ||||||| || | | | | || Sbjct 1700488 CACTCTGAAATGTACTCTCTTCTTTTAGAAACTTACATCAAAGA---TTCTAACCTTAAA 1700432 Query 61393 --CGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC- 61448 | || | || ||| || || || || || || ||| ||| || |||||||| Sbjct 1700431 ACCCATCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCTGATTGGGCT 1700372 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 |||| |||||| || | | | |||| ||| | || | || ||||| Sbjct 1700371 CTTC-GTTGGATTGATGGT---GCTGAATCGTTTGCTGAGAGGTTAATTGCTTTTGCTTG 1700316 Query 61509 GGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568 || || || | || ||| |||| || | | ||||| ||| | || || ||||| Sbjct 1700315 TGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGG 1700256 Query 61569 ACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTG 61628 | ||||| || | |||||| || ||| ||||||| || ||||| || | || || Sbjct 1700255 GTTGATGCCAGGATTAACCTTCTCGAACGAGCTGATATCGCGAGACGAAGGGCTTCACTG 1700196 Query 61629 TGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 ||||||||| |||||| || ||| ||| ||| | | | ||| || Sbjct 1700195 TGATTTTGCCTGCCTGCTATACA---GCTTACTGAAGAAGAAGCTGAGTGTTGAGAAGGT 1700139 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | | ||| ||| || || || ||||| | || || | || || || | || Sbjct 1700138 GCAGGGGATAGTTAAGGATGCAGTCGAAATCGAGCGAGAGTTCGTAACCGATGCGCTTCC 1700079 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || || | || ||||| |||| || ||| ||||| ||||| |||||||| || Sbjct 1700078 GGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGTCAGTACATTGAGTTTGTTGCAGA 1700019 Query 61809 CCGTCTGTTGG-TCGATTTGGGTATGAAGCGGATCTA--TAATACGAAAAACCCATTTGA 61865 | ||||||| | | |||||| |||| || | || | | | | ||||| || || Sbjct 1700018 TAGGCTGTTGGCTGCACTTGGGTGTGAAAAGG-TTTACGGAGTTC--AGAACCCGTTCGA 1699962 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||| |||| || || | || ||||| ||||| || ||||| | || || || Sbjct 1699961 TTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGA 1699902 Query 61926 CTATCA 61931 ||||| Sbjct 1699901 GTATCA 1699896 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||| ||| |||| |||||| || | ||||| | |||||||||||| || Sbjct 2958176 ATCCACAGTGAACTTGATAGCATCAGCAGCTGCTCTTGTCCTTAAATAGTACATGCCTGT 2958235 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| | || | ||| |||| ||| |||| || | ||| ||| | |||| || | Sbjct 2958236 CTTCAAACCCTTAGACCATGCATGGAAGTGCAGAGAGGTTAACTTTCCGAAATTGGGTTG 2958295 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 | || ||| ||||| | ||||| ||||||||| ||| || ||||| ||||||| Sbjct 2958296 TGTCATATGAATATTTAGGCTTTGACTTTGATCGATGAAACATCCTCGATCAACAGCCAT 2958355 Query 65257 GTCAA 65261 |||| Sbjct 2958356 ATCAA 2958360 >seq2087 Length=2955978 Score = 129 bits (142), Expect = 5e-25 Identities = 549/848 (65%), Gaps = 27/848 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || |||||||| |||||||| | || || |||||| | || |||| Sbjct 719549 ATGTACAAAAAAGCTGAAGCTTCATTCTGGACTGCCGAAGAAGTCGATCTTTCGCAAGAT 719490 Query 61156 ATGAATGACTGGG--AGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 | | |||||| | ||| ||| | || ||||| |||||||| | || | | Sbjct 719489 GTTCGTCACTGGGAAACCGTCTTAACCTCCGACGAACAGCATTTCATCACCCACATCCTC 719430 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || ||||| || || |||||| | | | | ||| | | Sbjct 719429 GCCTTCTTCGCCGCATCTGACGGCATAGTTCTCGAGAATCTCGCCGGAAGATTCATGAAA 719370 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 ||||| || || | || || || |||||| |||||||| || ||||| || || | Sbjct 719369 GAGGTCCAGGTTGCTGAAGCTCGCGCTTTCTATGGCTTCCAAATCGCCATTGAAAACATT 719310 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 ||||| || |||||| | |||| | || || || |||| || | | | | || Sbjct 719309 CACTCTGAAATGTACTCTCTTCTTTTAGAAACTTATATCAAAGA---TTCTAACCTTAAA 719253 Query 61393 --CGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC- 61448 | || | || ||| || || || || || || ||| ||| || |||||||| Sbjct 719252 ACCCATCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCTGATTGGGCT 719193 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC-GG 61507 |||| |||||| || | | | |||| ||| | || | || ||||| | Sbjct 719192 CTTC-GTTGGATTGATGGT---GCTGAATCGTTTGCTGAGAGGTTAATTGCTTTTGCTTG 719137 Query 61508 TGGTCGAGGG-TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGT 61566 || | |||| | | || || | ||| |||| | | ||||| ||| | || || ||| Sbjct 719136 TGTTGAAGGGATTTTCTTCTCCG-GGAGTTTTTG-CTCCATCTTCTGGCTTAAAAAGCGT 719079 Query 61567 GGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCAT 61626 || || ||||| ||| | |||||| || ||| ||||||| || ||||| || | ||| Sbjct 719078 GGGCTAATGCCGGGTTTAACCTTCTCGAACGAGCTGATATCGCGAGACGAAGGGCTTCAT 719019 Query 61627 TGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGT 61686 ||||| |||||| | || | | || ||| ||| ||| | | | |||| Sbjct 719018 TGTGACTTTGCTTGTCTGTTGTACA---GCTTACTGAAGAAGAAGCTGAGTGTGGAGAAG 718962 Query 61687 GTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTG 61746 || | ||| || || || || |||||| | || || | ||||| || | Sbjct 718961 GTTCAGGGGATAGTGAAGGATGCAGTCGATATCGAGCGAGAGTTCGTAACTGATGCGCTT 718902 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 || || || | || ||||| |||| || ||| ||||| ||||| |||||||| Sbjct 718901 CCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGTCAGTACATTGAGTTTGTTGCA 718842 Query 61807 GACCGTCTGTTGG-TCGATTTGGGTATGAAGCGGATCTA--TAATACGAAAAACCCATTT 61863 ||| | ||||||| | | |||| ||| || | || | | | | |||||||| Sbjct 718841 GACAGACTGTTGGCTGCGCTCGGGTGCGAAAAGG-TTTACGGAGTTC--AGAACCCATTC 718785 Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGC 61923 |||| ||||| |||| || || | || ||||| ||||| || ||||| | || || Sbjct 718784 GATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGG 718725 Query 61924 GACTATCA 61931 || ||||| Sbjct 718724 GAGTATCA 718717 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||| ||| |||| |||||| || ||||| | |||||||||||| || Sbjct 1894532 ATCCACAGTGAACTTGATAGCATCAGCAGCTGCTCGTGTCCTTAAATAGTACATGCCTGT 1894591 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| | || | ||| |||| || |||| || | ||| ||| | |||| || | Sbjct 1894592 CTTCAAACCCTTAGACCATGCATGAAAGTGCAGAGAAGTTAACTTTCCGAAATTGGGTTG 1894651 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 | || || ||||| | ||||| ||||| ||| ||| |||||||| ||||||| Sbjct 1894652 TGTCATGTGAATATTTAGGCTTTGACTTTGATCAATGAAACATCCACGATCAACAGCCAT 1894711 Query 65257 GTCAA 65261 |||| Sbjct 1894712 ATCAA 1894716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397551109075040